Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1191 ATGGGGAATTGCGTCAGCATTGATGAACCTAACACAAATAGTAGTAGTACGAAACCTAAGACTTCAGCTAGTTCGTTAGGATATGAATCTTCGTCTGTATCAACAACCACTGCAACTTCGATGAATATCAAAGATCTGAGAGAAAATGCTGGATACAGCAATGTTGATATTTTCACTTATGAGGAACTCAGGCTCGCCACCAAGCACTTTCGCCCCGACTTCATCTTAGGAGAAGGTGGTTTTGGAGTTGTGTATAAAGGAGTCGTAGATGATAGTGTCAGGTCAGGTTATAACTCCATTCAAGTCGCAATTAAAGAGCTTAATCTTGAAGGTTTTCAAGGCGATAGGGAATGGCTTACTGAAGTTAACTATTTAGGTCAATTTAGTCACCCAAATCTTGTGAAGCTCATTGGGTATTGCTGTGAGGATGATCACAGGTTATTGGTCTATGAATACATGGCAAATGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACCCTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAAAGGACTTGCTTTTCTCCATGGTGCTGAAAGGCCCATCATATATCGGGACTTCAAGACATCAAATATCTTGCTAGATGTGGATTTCAATGCAAAGCTTTCAGACTTTGGTCTTGCAAAGGATGGACCAATGGGAGACCAAACCCATGTTTCAACACGAGTAATGGGCACATACGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACAGCTCGAAGCGATGTGTATGGTTTTGGTGTGGTGCTACTTGAAATGCTTATTGGTAGGAGAGCATTAGACAAGAGCAGACCCAGCCGAGAGCACAACTTGGTCGAGTGGGCACGCCCGTTATTGAATAATAAAAAGGTAGTGGGAATTTTAGATCCTAAAATAGACGGGCAATATTCCTCTAAAACTGCAATAAGGGTGGCTCATCTTGCATACCAATGCCTTAGCCAAAACCCAAAAGGAAGACCTCTAATGAGCCAGGTTGTTGAATTTCTCGAAAATCATCAGCCGAAGGGGGAATTTGAAGAAGATCAATTGCTTCGAAGTGGAAGTAGCAGTGTAACCATTTATGAAGTTCCAAAGGGCACCGACGACACTACAACTGAAGGGGAAAAACAAAAGTAA 1167 0.4242 MGNCVSIDEPNTNSSSTKPKTSASSLGYESSSVSTTTATSMNIKDLRENAGYSNVDIFTYEELRLATKHFRPDFILGEGGFGVVYKGVVDDSVRSGYNSIQVAIKELNLEGFQGDREWLTEVNYLGQFSHPNLVKLIGYCCEDDHRLLVYEYMANGSLEKHLFRRVGSTLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDVDFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNNKKVVGILDPKIDGQYSSKTAIRVAHLAYQCLSQNPKGRPLMSQVVEFLENHQPKGEFEEDQLLRSGSSSVTIYEVPKGTDDTTTEGEKQK* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1191 388 PANTHER OS01G0588500 PROTEIN-RELATED 21 386 - -
Lan6g1191 388 Gene3D Transferase(Phosphotransferase) domain 1 153 366 - -
Lan6g1191 388 Gene3D Phosphorylase Kinase; domain 1 44 152 - -
Lan6g1191 388 CDD STKc_IRAK 76 348 - -
Lan6g1191 388 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 21 386 - -
Lan6g1191 388 ProSitePatterns Protein kinases ATP-binding region signature. 76 105 IPR017441 GO:0005524
Lan6g1191 388 MobiDBLite consensus disorder prediction 360 376 - -
Lan6g1191 388 MobiDBLite consensus disorder prediction 354 388 - -
Lan6g1191 388 MobiDBLite consensus disorder prediction 1 31 - -
Lan6g1191 388 ProSiteProfiles Protein kinase domain profile. 70 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1191 388 SUPERFAMILY Protein kinase-like (PK-like) 53 355 IPR011009 -
Lan6g1191 388 Pfam Protein tyrosine and serine/threonine kinase 76 346 IPR001245 GO:0004672|GO:0006468
Lan6g1191 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1191 Lan-Chr6 11986825 11996805 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1191 58 346 Glycoside Hydrolase AT3G07070 51.195 7.44e-98 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan6g1191 PK_Tyr_Ser-Thr 7.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1191 - - lang:109349878 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1191 6 11986825 11996805 Lan6g1191 6 11986825 11996805 ECH
Lan17g1162 17 19534360 19540553 Lan6g1191 6 11986825 11996805 LSH