Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1187 ATGGCACTGATCATAATCAGTGTCTTTGATAATAATAATATTAGATCAAGTTGGATCAAAACATTCTTTCTTCTTTCATGTGTTGTTCTTGGTTCTTATGGTGCTACAGACTCAGAGTTACTCCTTAAGTTTAAGGACAAATTACAAAGCAATAATAATGGATTATCCTCATGGAATGAATCAACTACTCCTTGTAATTCAGATCATGGTGGTAATAACTGGGCTGGTGTTATTTGCAATGGAGGGAAAATATGGGGGTTGCAACTTGAGAATATGGGTCTAAATGGTGTCTTTGATGTGGAATCTCTTAAGGATTTACCATTTCTTAGAACCTTAAGTTTCATGAATAATGATCTTAATGGTACAATGCCAGAGATAAACAAAGTAGTTGGTTTGAAAGCAATTTACCTTTCAAACAACAAGTTCTCTGGGGAGATTCCTGATCAAACTTTTGAAGGCATGAAATGGTTGAAGAAAATTCATTTGTCAAATAATCAGTTTAGTGGTGCTATTCCAAATTCTTTGACAAAGTTATCAAGGCTTATGGAGTTAAAGTTGGATGGAAACAAATTCAGTGGCTATATTCCTCCTTTTCAACAGAACACATTGAAATTATTTACTGTAGCTAATAATCAGTTGCAAGGTGATATACCTGCTACACTTAGTAAGATCCCTGAGTCTGCATTTTCTGGTAATGAAGGGTTATGTGGAACTCCATTGGGTGCATGCATCACTGTTGTTCATTATCCCAAGAAGCCTTCAACTATTAGCACTATTGTGGTTGCAGTAGTTGTTGGTTTAGCAGTAATATGTGTGATTGGAGCAATACTATTCATCCTTCTCCGTAAAAGAAAATCATCAAATTCCTCAGAGAATGAACCTTCAGGCCTTAACAAAAAGGGTGTGAAAGATGCAGGTGATGAGAGTCATAGATCATCAAGATCAAACCAAAGCAGAAGAGGAGAAAATACCATGAAGTTATGTTTCATAAAAGATGATGCAGAAAGATTTGATTTGCATGAGTTGCTTAGAGCTTCTGCTGAGATTTTAGGAAGTGGTTGTTTCAGTTCTTCTTATAAGGCTTCATTGGTGAGTGGTGGAAAGATAGTGGTGAAGAGGTTCAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCATGAACATATGAGAAGGATTGGAAGGTTGAATCATCCTAATTTGCTTCCTCTTGTGGCTTATTATTATAGAAAAGAAGAGAAGCTTTTGGTTTCTAACTATGTTCAGAATGGTAGTCTTGCTGTTAGACTTCATGCTCTAGGAGAACCAAGCCTTGATTGGCCAACAAGGTTGAAGATTGTAAAAGGCATAGCAACAGGTCTTGAATATCTATACAAAGACATGCCAAGCCTAATTGCACCTCATGGAAACCTTAAATCATGTAATGTTCTTCTAACACAATCATTTGAGCCACTCCTATGTGACTATGGTTTGGTTCCTGTCATAAACCAAGATCTAGCTCAAGACATCATGGTCATATACAAATCTCCTGAGTACTTACAACATGGAAGGATCACAAAGAAAACTGATATTTGGTGCCTTGGAATATTAATATTGGAAATTTTGAGTGGAAAGTTTCCTTCAAACTTTTTGCAACAAGGGAAAGGAAGTGAGTTAAGTTTGGCAAATTGGGTTCTTTCTGTTGACCCAGAAGATTGGATCAATGAAGTGTTTGATAAAGATATGGGAGGAACAAGGAATAGTGATTATGAAATGGTGAAGCTTTTGAAGGTTGCTTTGGAATGTTGTGAAGGAGATGTTGATAAAAGATTGGATTTGAAAGAAGCATTGGAGAAAATACAAGATGTTAAGGAGAAGGACCATGATGATGATTTTTATTCATCTTATGCTAGTGAAGCTGATATGAGATCTTCAAGGGGATTATCTGGTGAAATCATTTTCTAA 1941 0.3617 MALIIISVFDNNNIRSSWIKTFFLLSCVVLGSYGATDSELLLKFKDKLQSNNNGLSSWNESTTPCNSDHGGNNWAGVICNGGKIWGLQLENMGLNGVFDVESLKDLPFLRTLSFMNNDLNGTMPEINKVVGLKAIYLSNNKFSGEIPDQTFEGMKWLKKIHLSNNQFSGAIPNSLTKLSRLMELKLDGNKFSGYIPPFQQNTLKLFTVANNQLQGDIPATLSKIPESAFSGNEGLCGTPLGACITVVHYPKKPSTISTIVVAVVVGLAVICVIGAILFILLRKRKSSNSSENEPSGLNKKGVKDAGDESHRSSRSNQSRRGENTMKLCFIKDDAERFDLHELLRASAEILGSGCFSSSYKASLVSGGKIVVKRFKQMNNVGKEEFHEHMRRIGRLNHPNLLPLVAYYYRKEEKLLVSNYVQNGSLAVRLHALGEPSLDWPTRLKIVKGIATGLEYLYKDMPSLIAPHGNLKSCNVLLTQSFEPLLCDYGLVPVINQDLAQDIMVIYKSPEYLQHGRITKKTDIWCLGILILEILSGKFPSNFLQQGKGSELSLANWVLSVDPEDWINEVFDKDMGGTRNSDYEMVKLLKVALECCEGDVDKRLDLKEALEKIQDVKEKDHDDDFYSSYASEADMRSSRGLSGEIIF* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1187 646 Pfam Leucine rich repeat 132 191 IPR001611 GO:0005515
Lan6g1187 646 MobiDBLite consensus disorder prediction 297 317 - -
Lan6g1187 646 Gene3D Phosphorylase Kinase; domain 1 309 419 - -
Lan6g1187 646 Pfam Leucine rich repeat N-terminal domain 36 80 IPR013210 -
Lan6g1187 646 Pfam Protein tyrosine and serine/threonine kinase 348 611 IPR001245 GO:0004672|GO:0006468
Lan6g1187 646 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 20 628 - -
Lan6g1187 646 Gene3D Ribonuclease Inhibitor 202 243 IPR032675 -
Lan6g1187 646 ProSiteProfiles Protein kinase domain profile. 344 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1187 646 Gene3D Ribonuclease Inhibitor 34 201 IPR032675 -
Lan6g1187 646 MobiDBLite consensus disorder prediction 287 320 - -
Lan6g1187 646 PANTHER LRR RECEPTOR-LIKE KINASE 20 628 - -
Lan6g1187 646 Gene3D Transferase(Phosphotransferase) domain 1 420 635 - -
Lan6g1187 646 SUPERFAMILY L domain-like 37 237 - -
Lan6g1187 646 SUPERFAMILY Protein kinase-like (PK-like) 348 612 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1187 Lan-Chr6 11958002 11961852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1187 25 645 Receptor kinase-like Gene Family AT5G35390 52.141 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lan6g1187 PK_Tyr_Ser-Thr 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1187 - - gmx:100804368 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1187 6 11958002 11961852 Lan6g1187 6 11958002 11961852 ECH
Lan17g1159 17 19475888 19479554 Lan6g1187 6 11958002 11961852 LSH
Lan18g0151 18 1229340 1232803 Lan6g1187 6 11958002 11961852 LSH