Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1182 ATGTTTCTATCACTTCCCACAATTCATTCAACTTCTTTTCTTCATTTATTACCAACCACCACTTCATTTTCCATCAACCGCCGCCGTTACCTCACCACCGCCACAGCCACCGGCAGCGACTTTGACAAAACTCCGCCACAGCCTCTGCTTCAAGTCAACGACCTCAAAGCTAAGATCGTTGAAAACGGCGTTGACATTCTTCACGGCGTTAACCTCACCGTTAACCATGGTGAAGTTCACGCCATTATGGGAAAGAACGGTTCCGGAAAAAGCACTTTTGCTAAGGTTCTTGTTGGGCATCCGGACTATGAAGTTACCGGAGGCAGTGTCGTGTTTAAAGGGGAGAATTTGCTTGACATGGAACCTGAAGAAAGATCCCTTGCTGGTCTTTTTATGAGCTTCCAATCCCCTGTTGCGATTCCCGGTGTTTCAAATGATGAGTTTCTAGTGATGGCTTATAATGCTCGAAGAAGAAAGCTTGGCCTCCCTGAGCTTGGACCACTAGAGTGCTTTTCGTACCTGATGGAGAAACTCAAACTTGTTAATATGAAGCCTGACTTTCTCAATAGGAATGTTAATGAAGGATTCAGCGGTGGTGAACGCAAACGCAATGAGATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTGGACGAAATTGATTCTGGATTGGATGTTGATGCACTTAGAGATGTAGCAAATGCAGTCAACCAGATTCTGACCCCAAAGAATTCTCTATTGATGATAACTCATTATCGACGTCTTCTTGATCTCTTAAATCCCACACATGTCCATATTATGGACAAAGGGAGAATTGCAAGGACAGGTGACAAATCACTGGTAGCATTTATTGAGGATGAGGGATATGAAACAGTCTCCGCTTTAACTTAG 897 0.4437 MFLSLPTIHSTSFLHLLPTTTSFSINRRRYLTTATATGSDFDKTPPQPLLQVNDLKAKIVENGVDILHGVNLTVNHGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVVFKGENLLDMEPEERSLAGLFMSFQSPVAIPGVSNDEFLVMAYNARRRKLGLPELGPLECFSYLMEKLKLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVNQILTPKNSLLMITHYRRLLDLLNPTHVHIMDKGRIARTGDKSLVAFIEDEGYETVSALT* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1182 298 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524
Lan6g1182 298 Pfam ABC transporter 67 221 IPR003439 GO:0005524
Lan6g1182 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 280 IPR027417 -
Lan6g1182 298 TIGRFAM sufC: FeS assembly ATPase SufC 50 293 IPR010230 GO:0005524
Lan6g1182 298 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 50 296 IPR003439 GO:0005524
Lan6g1182 298 Gene3D - 49 296 IPR027417 -
Lan6g1182 298 CDD ABC_FeS_Assembly 50 291 IPR010230 GO:0005524
Lan6g1182 298 SMART AAA_5 76 273 IPR003593 -
Lan6g1182 298 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 43 295 IPR010230 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1182 Lan-Chr6 11908824 11912588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1182 64 281 Calmodulin-binding Proteins AT2G36910 23.810 1.31e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g1155 17 19378769 19383834 Lan6g1182 6 11908824 11912588 LSH