Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1172 ATGAATAGCCAAAAGGGTAGTAGTTGTGATTATGAAGAAGAAATGTGTTCCTCAGATGTGAATAGCAAAGTGGTTGTGGTTGCAGTTAAAGCTTCCAAAGATCTTTCAAAAACTGCTTTGGTTTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGTTATTGGTTGTCATGCCAGCACTATCTTCAAGCAAAAAGGTGTGGGGGCTTTCAAGATTTACTACTGATTGTACCAGTAGTCAGTGGCGATCTGTTTCAGATCCGAAAGAAGTAATTACAAATTCTTGTTCTCAATTGGTGCTTCAACTCCATGGTTTTTATGACCCGGATAAGACAAAGATCAGAGCAAAGATTCTTTCAGGCTATTTATTTGGAGAGGTGGCTGCTGAAGCCAAGAGAGTCCAATCATGTTGGGTTATATTGGACAAAAAATTGAAACATGAAAAGAAATACTGCATGGAGCAGCTGCATTGCAATATTGCAATTATGAAGCGATCTGGGCCGAAGATTCTACGCTTAAATTTGAACATTTCACCGAAGATGGAATACAATGAGGGTTATTCGTTGTCACTGGAGCTTAATGCATATACAAGAAACTTAAAAGACAAGTCTGATAATTCAGATATAATTAGAGGACCAGCAGTTACTCCTGCTAGTAGTCCAGAGCAAGGGTCGCCGCTAATGACTGCAACTGATATTGGAACATCATCAATATCAAGCACAGATCACGGGACTTCGCCATTTTTCAACTTTGATAATTATGAAAGACGAAGGAGAGGTTTTCCCTTCGAGGGTCTGACAAATCTTGAGGGTATTGAATCTGACTCCGAGAGTGAAAAGCTAAGTTCATCATCCAAAAGTTCATATTTTCAGCCATGGATTGAGAATGTAATTTGTATTGATGGTGAGTTCTCAAAACATGAAGACAATATGCAAAGATCCAGTGATAAGGCTTTGGTTTCTACCTATGAAGCTGTGCTTCAGAAATTTTCAAAGATGGATCTAGATCCTGTTGTAGGAATGCTTAATTGTAAAATTGATGTAAACATAAACAAAAGTGTTAGAGAATCAATTTCACTAGCCAGAAATGCCCCTCTTGGACCACCTCCATTGTGTTCTATTTGTCAGCATAAGGCACCTGTATTTGGGAATCCTCCAAGGTGGTTTACATTTACTGAATTGCAACTTGCCACGGGTGGTTTTTCGCAAGCAAATTTCTTGGCTGAAGGTGGTTTCGGTTCTGTACACCGCGGTATCCTACCAGATGGTCAAGTCATTGCTGTCAAGCAATATAAATTGGCCAGTACTCAAGGCGATAAAGAATTTTGCTCAGAAGTCGAGGTCTTAAGCTGTGCACAACATCGTAACGTTGTGATGCTGATAGGATTTTGTGTAGAGGATGGAAGAAGATTGTTAGTTTATGAATACATTTGCAATGCCTCTCTGGATTCTCATCTTTATGGACGAAAACAGAATGTACTGGAATGGTCGGCACGGCAAAAAATTGCAGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTTGGTTGTATAGTACACCGCGATATGCGGCCTAACAACATCCTTCTAACTCATGATTTTGAAGCATTAGTCGGAGATTTTGGACTTGCTAGATGGCAGCCTGATGGAGATATGGGTGTGGAAACTAGGGTGATAGGAACATTTGGATATTTGGCTCCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCCTTTGGGATAGTATTATTGGAGCTTGTTACTGGAAGAAAAGCTATGGATATAAACAGGCCCAGAGGCCAACAATGCCTTAGTGAATGGGCACGGCCCTTGCTTGAAGAACATGACATTCTCGATTTACTCGATCCCAACTTAAGGAACTTCTATATAGATGACGAGGTTCATCGCATGCTGCAATGTTGCTCTTTGTGCATCAAACGCGATCCTCATTTAAGGCCTCGAATGTCTCAGGTGCTGAGGATGCTGGAAGGTGACATTCTATATGATTGCTATACACATTTCCATTTTCCAGAGCACATTAATAGAGAAAATAAAGAAGGATAA 2097 0.4034 MNSQKGSSCDYEEEMCSSDVNSKVVVVAVKASKDLSKTALVWALTHVVQPGDCIKLLVVMPALSSSKKVWGLSRFTTDCTSSQWRSVSDPKEVITNSCSQLVLQLHGFYDPDKTKIRAKILSGYLFGEVAAEAKRVQSCWVILDKKLKHEKKYCMEQLHCNIAIMKRSGPKILRLNLNISPKMEYNEGYSLSLELNAYTRNLKDKSDNSDIIRGPAVTPASSPEQGSPLMTATDIGTSSISSTDHGTSPFFNFDNYERRRRGFPFEGLTNLEGIESDSESEKLSSSSKSSYFQPWIENVICIDGEFSKHEDNMQRSSDKALVSTYEAVLQKFSKMDLDPVVGMLNCKIDVNINKSVRESISLARNAPLGPPPLCSICQHKAPVFGNPPRWFTFTELQLATGGFSQANFLAEGGFGSVHRGILPDGQVIAVKQYKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNASLDSHLYGRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAMDINRPRGQQCLSEWARPLLEEHDILDLLDPNLRNFYIDDEVHRMLQCCSLCIKRDPHLRPRMSQVLRMLEGDILYDCYTHFHFPEHINRENKEG* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1172 698 Pfam Protein tyrosine and serine/threonine kinase 407 673 IPR001245 GO:0004672|GO:0006468
Lan6g1172 698 MobiDBLite consensus disorder prediction 220 243 - -
Lan6g1172 698 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 20 678 - -
Lan6g1172 698 MobiDBLite consensus disorder prediction 209 243 - -
Lan6g1172 698 PANTHER OS01G0253100 PROTEIN 20 678 IPR045271 GO:0004714|GO:0006468
Lan6g1172 698 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Lan6g1172 698 SUPERFAMILY Protein kinase-like (PK-like) 383 674 IPR011009 -
Lan6g1172 698 Gene3D Transferase(Phosphotransferase) domain 1 480 683 - -
Lan6g1172 698 ProSiteProfiles Protein kinase domain profile. 403 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1172 698 CDD STKc_IRAK 409 675 - -
Lan6g1172 698 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1172 Lan-Chr6 11790223 11795130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1172 383 677 Trihelix Transcription Factor Family AT1G70460 51.163 1.14e-100 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lan6g1172 PK_Tyr_Ser-Thr 6.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1172 - - aprc:113855006 1130.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1172 6 11790223 11795130 Lan6g1172 6 11790223 11795130 ECH