Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1161 ATGGGAAGAGCTCCATGTTGTGACAAAGCTAATGTGAAAAGAGGGCCATGGTCTCCTGATGAAGATGCAACCCTAAAAAACTACCTTAAGAATCATGGCACTGGTGGTAATTGGATAACCCTCCCACAAAAAGCAGGCCTTAAACGTTGTGGGAAGAGTTGTCGTCTTAGGTGGCTGAACTATCTTAGGCCACATATCAAGCATGGAGGTTTCACTGATGAGGAAGATAGAGTTATATGCACCCTTTATGCTACCATTGGAAGCAGGTGGTCCCTAATAGCAGCCCAACTACATGGGAGAACAGACAATGATGTGAAAAACCATTGGAATACAAAGTTAAAGAAAAAGTTTTTGGCAGAAAACACCAATATTGCCACTAACAACACTGGTCACATGATCAACAACATTAATAGTCAACAGTTCTCAACTTTCACTCCTCATCCTCAAGTTGAAGCCTTTTTATTTGATCATAAGAACTCACCTTGTTATGACCCCTATGTTTTGGGTTTGGACCAAACACCATTTCCAGTTTCCTTATCAATGCCTTTGGAATTGGATGTTTCAGGTTTTGAAACCAGCATGAGTAACAATTGTGGAAATGGAATTATACCATTTTGTAAGGAAGAGAAGGATAATAATACACAATGGCTTGGGTATGAAGATGGAGATGCTGCCATGTTGCTTGATTTTGTGTATGAAGATTTCTTGCATAACAATGGGTTTGTTTCTCAAGACAAAACCAACCAAATTGCCTCATCATCTAGCTAA 768 0.3971 MGRAPCCDKANVKRGPWSPDEDATLKNYLKNHGTGGNWITLPQKAGLKRCGKSCRLRWLNYLRPHIKHGGFTDEEDRVICTLYATIGSRWSLIAAQLHGRTDNDVKNHWNTKLKKKFLAENTNIATNNTGHMINNINSQQFSTFTPHPQVEAFLFDHKNSPCYDPYVLGLDQTPFPVSLSMPLELDVSGFETSMSNNCGNGIIPFCKEEKDNNTQWLGYEDGDAAMLLDFVYEDFLHNNGFVSQDKTNQIASSSS* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1161 255 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan6g1161 255 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan6g1161 255 CDD SANT 71 113 IPR001005 -
Lan6g1161 255 PANTHER OS09G0431300 PROTEIN 1 175 - -
Lan6g1161 255 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan6g1161 255 PANTHER TRANSCRIPTION FACTOR RAX3 1 175 - -
Lan6g1161 255 CDD SANT 16 62 IPR001005 -
Lan6g1161 255 Gene3D - 70 137 - -
Lan6g1161 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan6g1161 255 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan6g1161 255 Gene3D - 7 68 - -
Lan6g1161 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan6g1161 255 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan6g1161 255 SMART sant 67 115 IPR001005 -
Lan6g1161 255 SMART sant 13 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1161 Lan-Chr6 11718678 11720518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1161 1 118 MYB Transcription Factor Family AT5G65790 80.508 1.13e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g1161 Myb_DNA-binding 8.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1161 K09422 - gmx:100779092 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1161 6 11718678 11720518 Lan6g1161 6 11718678 11720518 ECH