Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1160 ATGATGCTAGGTGAAGAACCTCACCCAACGGTGCACGTGCCTCACGTGCCACCGTGGCCTTTCTTTGACGACGATATCTTTTCTTCTCTTTCCGTTAACGGCGACGTTAGTGCCGTTAACAACGCCGGCGAATACTCTCCGTGCTATTTGCATGAAGCGCTTTTGGCTCTGCAGCGCTATCTTCCGTCCAACGACGACGGCGACGGTGACTCGGAGTTGGATTCTCCGGTGGATGCTTTTTCCGGTGACTATTTCAGAATGTTCGAGTTCAAGATACGGAAGTGTGCACGTGGAAGGTCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAGAAGGCACGCCGCCGTGACCCGAGGAAGTTTCATTACTCCGGTACGGCGTGCCCTGATTTTCGCAAAGGTGGATGCAAGAAAGGCGATGCATGTGAGTTCGCGCACGGCGTTTTCGAGTGCTGGCTACACCCGGCACGCTACCGGACTCAGCCGTGCAAGGACGGTGTCAGTTGCCGAAGAAGGGTTTGTTTCTTCGCTCACATGCCGGAGCAACTTAGGGTTCTTCCTCAGCAGAGTCCCCGGAGTACCGATTCTTACGACGGTTCACCTCTCCGTACAAAAACACTGCAACTTTTCCCCTCAACAGAGTCTAACTCCCCGCCGGCGATGAATTCTCCATCAGAATCTCCTCCGATATCACCGATGACAAAGTCGATGTTTTCGTCTCTTCGAAACCTGCAACTTGATAAGATGAAGTCATTACCATCTTCTTGGAACATTCCAATTGGGTCTCCTCGATTCGGATCACCGAGGGGGCCGGTGATCCGGCCTGGATTCTGTAGCTTGCCATCTACTCCAACGACGCAGCCTCCGGTTCGGGCCGGGTTTAACTGTTTTGAAGCATGGGACAGTAGTTGTTGTGAGGAGGAGCCTGTGATGGAGAGGGTTGAATCTGGAAGAGATATAAGGGCCAAGATGTTTGAGAAGTTAAGCAAAGAGAATTCTCTAGCTAAATTGGATTTAGCTCCATAA 1032 0.5213 MMLGEEPHPTVHVPHVPPWPFFDDDIFSSLSVNGDVSAVNNAGEYSPCYLHEALLALQRYLPSNDDGDGDSELDSPVDAFSGDYFRMFEFKIRKCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGGCKKGDACEFAHGVFECWLHPARYRTQPCKDGVSCRRRVCFFAHMPEQLRVLPQQSPRSTDSYDGSPLRTKTLQLFPSTESNSPPAMNSPSESPPISPMTKSMFSSLRNLQLDKMKSLPSSWNIPIGSPRFGSPRGPVIRPGFCSLPSTPTTQPPVRAGFNCFEAWDSSCCEEEPVMERVESGRDIRAKMFEKLSKENSLAKLDLAP* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1160 343 Gene3D - 124 188 - -
Lan6g1160 343 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Lan6g1160 343 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Lan6g1160 343 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Lan6g1160 343 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Lan6g1160 343 PANTHER UNKEMPT FAMILY MEMBER 7 339 IPR045234 -
Lan6g1160 343 MobiDBLite consensus disorder prediction 212 234 - -
Lan6g1160 343 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1160 Lan-Chr6 11698733 11700144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1160 80 234 C2H2 Transcription Factor Family AT5G12850 58.025 1.10e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan6g1160 zf-CCCH 7.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1160 - - aprc:113867365 482.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1160 6 11698733 11700144 Lan6g1160 6 11698733 11700144 ECH
Lan18g0363 18 6772069 6773435 Lan6g1160 6 11698733 11700144 LSH