Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1153 ATGAACAAGACCTGTTCTCTATCTTTTCTCCTCCTCCTTCTCTTCCATCATTTGACTGCAGCAAAAGCTGCCATTGGTGTTAGTATTGGCACTGGAGGTGTTGGTGTAGGTGTAGGTATTGGTGTTGGCAATGGCGGTGGCGGCAGCGACAATGGTGCTAACAGTCCTGGCCCCTCAGGATCATCTTCAGTGCCAAAACATGACAATTCTTACACAGCTCTTCAGGCATGGAAATCAGCAATCACTGATGACCCATTGAAGATTTTAGATACTTGGGTTGGTCCTGATGTGTGTTCTTATAAAGGAATATTTTGTTCAAATAGTCCTCAAGATGCAACAACTAGTAGCACTGTTGCAGGAATAGATCTCAACCATGCTAATCTCCAAGGAACTATTGTCAAAGAACTTTCTTTACTATCTGACATGAATCTTCTGCATCTCAACAGTAATAGATTCACTGGTACACTTCCTGATACATTCAAAGACCTTGTTTCTCTTGAAGAGTTAGACCTCAGTAATAACCAACTTTCAGGTCCTTTTCCAACAGTTACTTTATACATGCCAAACCTCATTTACTTGGACCTTAGGTTCAACTCTTTCTCAGGAACCCTTCCTGAACAACTCTTCAATAACAATCTTGATGCAATTTTTCTCAACAACAATCAATTTGGTGGTGAAATCCCACAGAGTTTGGGTAACTCACCAGCCTCAGTAATAAACTTAGCTAACAACAAGTTAAGTGGAAACATGCCAATAAGCTTTGGCATCATTGGTTCAAATTCTAAGCTTAGGGAGATTCTCTTCCTCAATAACAAGATAACTGGTTGCATTCCTCAAGGCTTAGGAATCTTCACAGAGATGCAAGTTCTTGATCTCAGCTTCAACTCACTCATGGGTCATTTGCCAGACACAATATCTTGCCTTCAAGACATAGAGGTTCTCAACTTGGCACATAACAAGCTTTCTGGAGAGTTATCTGATGTTATATGTTCTCTGAGAAGCCTAGTGAATCTAACTGTTGCTTATAATTTCTTCTCTGGGTTCAGTCAACAATGTTCACGGCTTTTCAATGTGGGATTTGATTTCTCAGATAATTGTATTCCTGGTAGGAACATGCAGAGGCCTCAACCAGAATGTTCTGTTATCCCAGGTGGTAGTCTCAGTTGTCTAAGAATCCCAACTCCAAAACCTATTGCTTGTATTTCATTGGCTGCAAGTCTTAACTCTATGCATACAGATCACAGTTCATCATCTCCCTAA 1260 0.4056 MNKTCSLSFLLLLLFHHLTAAKAAIGVSIGTGGVGVGVGIGVGNGGGGSDNGANSPGPSGSSSVPKHDNSYTALQAWKSAITDDPLKILDTWVGPDVCSYKGIFCSNSPQDATTSSTVAGIDLNHANLQGTIVKELSLLSDMNLLHLNSNRFTGTLPDTFKDLVSLEELDLSNNQLSGPFPTVTLYMPNLIYLDLRFNSFSGTLPEQLFNNNLDAIFLNNNQFGGEIPQSLGNSPASVINLANNKLSGNMPISFGIIGSNSKLREILFLNNKITGCIPQGLGIFTEMQVLDLSFNSLMGHLPDTISCLQDIEVLNLAHNKLSGELSDVICSLRSLVNLTVAYNFFSGFSQQCSRLFNVGFDFSDNCIPGRNMQRPQPECSVIPGGSLSCLRIPTPKPIACISLAASLNSMHTDHSSSSP* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1153 419 Gene3D Ribonuclease Inhibitor 239 384 IPR032675 -
Lan6g1153 419 Gene3D Ribonuclease Inhibitor 67 238 IPR032675 -
Lan6g1153 419 PANTHER LRR/EXTENSIN 1 419 - -
Lan6g1153 419 SUPERFAMILY L domain-like 69 356 - -
Lan6g1153 419 MobiDBLite consensus disorder prediction 47 66 - -
Lan6g1153 419 Pfam Leucine rich repeat 144 199 IPR001611 GO:0005515
Lan6g1153 419 PRINTS Leucine-rich repeat signature 166 179 - -
Lan6g1153 419 PRINTS Leucine-rich repeat signature 308 321 - -
Lan6g1153 419 MobiDBLite consensus disorder prediction 48 66 - -
Lan6g1153 419 Pfam Leucine rich repeat N-terminal domain 69 106 IPR013210 -
Lan6g1153 419 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 1 419 - -
Lan6g1153 419 SMART LRR_typ_2 284 308 IPR003591 -
Lan6g1153 419 SMART LRR_typ_2 139 162 IPR003591 -
Lan6g1153 419 SMART LRR_typ_2 187 211 IPR003591 -
Lan6g1153 419 SMART LRR_typ_2 163 186 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1153 Lan-Chr6 11615123 11616984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1153 50 391 Leucine-rich Repeat extension Gene Families AT3G24480 47.278 2.95e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1153 - - gmx:100820611 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1153 6 11615123 11616984 Lan6g1153 6 11615123 11616984 ECH