Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1152 ATGGGACGTGGAAGAATACCTATGGAAGTGATTAAGAAGGAGAAAGCTCGCAAGACAACATTTCAGAAGAGAAAGAATGGCCTAATGAAGAAAGTGTATGAGTTTTCAACTCTCTGTGGTGTTGATGTTTGCCTAATTATTTATGCCCCGGACTTCGATGATCAAGGAGACGCTGAATTCGAGACATGGCCACACGACACAAGAGAGGTACACCGCATAATTCAAAAGTATAACAACACAACAAGTGATAGGCGTCCTAGGATCTATGATGTGCAAGAGTACTTCAAAGATAGGATGAAAAAAGTTGAAGCTGAGATATCCAAAGTGCACAAAGAGAAGCACAAGATCATGTACCCAACTTGGGATGAATCTTTCAATGGCTTGGGAGAAGAACAATTGAGGATGTTTGTTAGTAGTTTGGATGCTAAGCTTAATACTTGTAATCAAAGAATCAACATGCTAAAAGGAGATATTGGAAAAGGAAAAATAGCAGAACCAAACAAGGCTGGGTTAGTTACTCCTTACTTGGCTTCAAAGCCAAGTAACCATCTCAACTTCTTGCTGAACATGCCTCAAGGACAATTTTATCCTTCCCCTATGAAGCCGATTAGTGATAACATTAACAACCAGCTAGCATTTTATCCATATCAGTTTGGCCAGATTTCTCAAACTAACATGCTTCATTTCGGTCAAAATTGTTTGCAATTGATGGGACCAAATGGAATGTCTGATTGTGTTGGAGGACAATTTGGTGGTGTTACTTATGATCCGAAAACTGCTATGCTAAAGGATTATGAAGCTGAAAATAATGAAAATATATCACCATACTATTATAATGGAAATGTACACACAATGCAGCCATATAACATTATGCAGAGTTTTCCTTCTCAGAATTCACAGTATGAAGCTGCTTTCAATACTCCACCAAATCTATCACCTTCTCAAGGGTTTGCACCTCATACATTCTATGATACAAATATGCTTCAAGCCCATATATTGAATGACATGCATGGAAGGAAATAG 1023 0.3822 MGRGRIPMEVIKKEKARKTTFQKRKNGLMKKVYEFSTLCGVDVCLIIYAPDFDDQGDAEFETWPHDTREVHRIIQKYNNTTSDRRPRIYDVQEYFKDRMKKVEAEISKVHKEKHKIMYPTWDESFNGLGEEQLRMFVSSLDAKLNTCNQRINMLKGDIGKGKIAEPNKAGLVTPYLASKPSNHLNFLLNMPQGQFYPSPMKPISDNINNQLAFYPYQFGQISQTNMLHFGQNCLQLMGPNGMSDCVGGQFGGVTYDPKTAMLKDYEAENNENISPYYYNGNVHTMQPYNIMQSFPSQNSQYEAAFNTPPNLSPSQGFAPHTFYDTNMLQAHILNDMHGRK* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1152 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Lan6g1152 340 Gene3D - 13 103 IPR036879 GO:0003677|GO:0046983
Lan6g1152 340 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lan6g1152 340 SMART madsneu2 1 65 IPR002100 GO:0003677|GO:0046983
Lan6g1152 340 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Lan6g1152 340 PANTHER PROTEIN, PUTATIVE-RELATED 3 241 - -
Lan6g1152 340 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lan6g1152 340 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan6g1152 340 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan6g1152 340 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan6g1152 340 PANTHER MADS BOX PROTEIN 3 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1152 Lan-Chr6 11612549 11613710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1152 1 251 Type I MADS-box Gene Family AT5G55690 30.859 1.27e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan6g1152 SRF-TF 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1152 - - lang:109350953 714.531