Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1147 ATGTCAAATTTTCATTACATTTTCTATGTTTTAGTACTTCTTCTCCTTCTCCAAAATCCCATTTCAACACAAAGCCACACAAAGGGAATTAGACCAGGGCATTCAGAAGGGAATGGAGTAACCACAAACATGACCAGAGTCCAATTTTCAGAACAACAGTTCATGAAATGGGTTAAGTTTGTTGGTGGTCTTAAACACACTGTTTTTGGGACAGCAAAAAATAAGCTTTTTCCTTCACTCACTTTGCAAGTTTCTAAGAATCCTTCAAAAGGAGATTTTTCTTCAATTCAAGCAGCCATTGATTCCTTACCATTTATCAATCTAGTGAGAGTTGTTATTAAGGTTCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCACCATTGAAATCCTTCATAACAATACAAGGATCAGGAGCAGATAAAACCATTGTTCAATGGGGTGACACAGCTCAAACACCAGGGCCAAGAGGCCAGCCACTAGGAACCTATGGTTCTGCAACTTTTGCAGTGAATTCACCTTATTTCATTGCAAAGAACATAACATTCAAAAACACTACCCCGGTTCCGGCACCGGGAGCAGTTGGAAAACAAGCAGTGGCATTAAGAATTTCAGCAGATACAGCAGTTTTTCAAGGCTGCAAATTCTTAGGAGCACAGGACACACTCTATGATCATCTTGGTAGACACTACTACAAGGATTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTCTCTCTATTTGAGGGATGTCACGTGCATGCAATAGCACAAAATACAGGAGCACTAACAGCCCAAGGAAGGGGCAGTTTATTAGAGGACACAGGTTTTTCTTTTGTGCACTGTAAGGTCACGGGCTCAGGAGCACTGTACCTTGGAAGGGCTTGGGGACCCTTTTCTAGGGTTGTCTTTGCTTACACTTATATGGACAATATCATTATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTATTCTATGGACAATATAAATGCACAGGACCAGGTGCAAGGTTTGCAGGGAGAGTATCATGGTCGAGAGAACTCACTGATGAGGAAGCTAAACCATTTATTTCAATAAACTATATTGATGGTTCTGAATGGATTAGGGATATTTTTTGA 1149 0.4073 MSNFHYIFYVLVLLLLLQNPISTQSHTKGIRPGHSEGNGVTTNMTRVQFSEQQFMKWVKFVGGLKHTVFGTAKNKLFPSLTLQVSKNPSKGDFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIQGSGADKTIVQWGDTAQTPGPRGQPLGTYGSATFAVNSPYFIAKNITFKNTTPVPAPGAVGKQAVALRISADTAVFQGCKFLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIAQNTGALTAQGRGSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGARFAGRVSWSRELTDEEAKPFISINYIDGSEWIRDIF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1147 382 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Lan6g1147 382 Gene3D - 79 381 IPR012334 -
Lan6g1147 382 PANTHER PECTINESTERASE 1 379 - -
Lan6g1147 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 379 - -
Lan6g1147 382 SUPERFAMILY Pectin lyase-like 78 378 IPR011050 -
Lan6g1147 382 Pfam Pectinesterase 89 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1147 Lan-Chr6 11561185 11566403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1147 93 378 Carbohydrate Esterase AT5G47500 50.174 2.37e-100 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1147 K01051 - gmx:100802832 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1147 6 11561185 11566403 Lan6g1147 6 11561185 11566403 ECH
Lan18g0351 18 6503189 6510320 Lan6g1147 6 11561185 11566403 LSH