Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1127 ATGGCTGAGCGACAAGGCTCAGAGATAAACACAAATACTAACCCTTCTTCTGCTTCTTCTTCACCATTGTCACTAACTTTCACTATCACTGAACCGAAGGCGTCATTATCGGAGCCCCAAATACCCGACCCGGATAAGAAAAAACCGAAGAAACGACCCAGAGATAGTAGTAACAGCAAGCACCCGGTTTTCAGAGGGGTTCGAATGCGAGCATGGGGAAAATGGGTATCAGAAATCCGAGAACCGAGAAAGAAGAACCGGATCTGGCTAGGAACGTTCGCAACTCCTGAGATGGCGGCGCGTGCACATGACGTGGCGGCTATAACGATCAAAGGCAGTTCCGCCATCCTCAACTTCCCTGAACTCGCCGGGTCATTGCCCCGACCCGATTCCAATTCGCCCCGGGATGTTCAAGCCGCTGCAGCTAAAGCCGCAGCGATGGAAGTGTTCGAGCCACAAACGACGTCGCATTTATCTTCATCATCAGAATCTTCGACAAATTCTTGTTGTGAAGAATCAAATGAAGAGGAACTAGGGAAGATAGTGGAACTTCCACATTTGGGTACAAGTTATGAATCACCCGACCCGATTAATAATGAGTTGGTGTTTTTTGACCCGGTTGATGGGTGGCCCAACTATTATAACATTTATGATGGTGGGTACTATGTTGGGGATCACATTTCAATGCAAGACTATTATTACTCAGAGAGTGTTATGCTTTCTGGTTTTGAAGGTTCTTTGTGGCAACATTAA 753 0.4688 MAERQGSEINTNTNPSSASSSPLSLTFTITEPKASLSEPQIPDPDKKKPKKRPRDSSNSKHPVFRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAAITIKGSSAILNFPELAGSLPRPDSNSPRDVQAAAAKAAAMEVFEPQTTSHLSSSSESSTNSCCEESNEEELGKIVELPHLGTSYESPDPINNELVFFDPVDGWPNYYNIYDGGYYVGDHISMQDYYYSESVMLSGFEGSLWQH* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1127 250 MobiDBLite consensus disorder prediction 1 35 - -
Lan6g1127 250 MobiDBLite consensus disorder prediction 40 61 - -
Lan6g1127 250 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Lan6g1127 250 PRINTS Ethylene responsive element binding protein signature 86 102 IPR001471 GO:0003700|GO:0006355
Lan6g1127 250 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Lan6g1127 250 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Lan6g1127 250 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Lan6g1127 250 MobiDBLite consensus disorder prediction 1 64 - -
Lan6g1127 250 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
Lan6g1127 250 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Lan6g1127 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 249 - -
Lan6g1127 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 17 249 - -
Lan6g1127 250 Pfam AP2 domain 62 112 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1127 Lan-Chr6 11050107 11051590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1127 45 211 AP2-EREBP Transcription Factor Family AT5G25810 58.960 4.32e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g1127 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1127 K09286 - pvy:116108531 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1127 6 11050107 11051590 Lan6g1127 6 11050107 11051590 ECH
Lan6g1127 6 11050107 11051590 Lan3g0290 3 1954737 1955374 PCT
Lan3g0290 3 1954737 1955374 Lan6g1127 6 11050107 11051590 PCT