Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1121 ATGGAACGCATCGTTGGCGGCAAGTTCAAGCTCGGCCGAAAGATCGGAAGTGGATCCTTCGGTGAAATTTACCTCGCTACGCATATCGATACCTTTGAGATCGTCGCCGTCAAGATCGAGAACAGTAAAACAAAGCATCCACAATTGCTTTATGAGGCAAAGCTGTACAATATTCTTCAAGGAGGAAGTGGGATTCCGAGCATAAAATGGTTTGGTGTGGATGGGGAGGAAAATGTGCTTGTGATTGATTTGCTGGGGCCGAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTCTCATTGAAGACAGTGTTAATGTTGGCTGATCAAATGATCACTAGAATAGAATATGTGCATTCTAAAGGATATTTACATCGGGATATAAAGCCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAACCAGGTTTACATAATTGATTATGGGCTTGCAAAACGATACCGGGACTCTGCAACCAATCGCCACATCCCCTACAGAGAGAACAAAAACTTGACTGGGACTGCACGCTATGCAAGTTGCAACACTCATCTTGGGATCGAGCAAAGCCGGCGAGATGATTTGGAGTCACTAGGATATGTACTTCTGTACTTCCTGAGAGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACAAAGAAACAAAAGTATGATAAAATATGTGAGAAGAAATTGTCAACTCCTATTGAGGTACTATGCAAATCTCATCCTGTTGAGTTTGCATCATACTTCCATTACTGCCACTCTTTGATGTTTGAACAACGACCTGATTATGGATTCTTGAAGCGCCTATTTAGGGACCTATTTGCTCGAGAAGGTTATGAATTTGATTTCGTTTTTGATTGGACCATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTTCAGCCTCTCATATCTCCAGTTCCTGGAGCACGTAACAGTCATGCAATGCCAATGGATGTTGACAACCATCAAGGGCATGGCTCCGAGCGCATTAGATCAGACAATGCTACTGGTTCTGGTGTTAAAACTCAGTTTGCATCACCAGAAGTTAAAATTTGGAGTTCTGAAAATCCTCTTAACAAGAATACTTTTGGGGAAGCAAATATGCCCTCTACTTCATATACTCCTGCTAGTACATCAAGATGGAACTCCTTGAGGCCTGGCCTGTCTACTGAAGCTTCTAACCCTGGACACGGGCAAGGCAGTAAAGTTGGCCCTTCAAGTAGCTGGATGGCATCTCTGCAAAACATCTTATGA 1266 0.4329 MERIVGGKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWFGVDGEENVLVIDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDYGLAKRYRDSATNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICEKKLSTPIEVLCKSHPVEFASYFHYCHSLMFEQRPDYGFLKRLFRDLFAREGYEFDFVFDWTILKYQQAQKNRVQPLISPVPGARNSHAMPMDVDNHQGHGSERIRSDNATGSGVKTQFASPEVKIWSSENPLNKNTFGEANMPSTSYTPASTSRWNSLRPGLSTEASNPGHGQGSKVGPSSSWMASLQNIL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1121 421 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan6g1121 421 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 407 - -
Lan6g1121 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan6g1121 421 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1121 421 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Lan6g1121 421 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1121 421 PANTHER CASEIN KINASE-RELATED 1 407 - -
Lan6g1121 421 Gene3D Transferase(Phosphotransferase) domain 1 1 328 - -
Lan6g1121 421 MobiDBLite consensus disorder prediction 325 344 - -
Lan6g1121 421 MobiDBLite consensus disorder prediction 364 421 - -
Lan6g1121 421 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1121 421 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1121 Lan-Chr6 11000910 11005730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1121 3 213 Miscellaneous Gene Families AT3G23000 29.091 1.61e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan6g1121 Pkinase 3.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1121 K08960 - gmx:100800342 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1121 6 11000910 11005730 Lan6g1121 6 11000910 11005730 ECH
Lan6g1121 6 11000910 11005730 Lan3g0295 3 1988385 1992449 PCT
Lan3g0295 3 1988385 1992449 Lan6g1121 6 11000910 11005730 PCT