Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1117 ATGAGAGAAGCCATGGATAGAGGTGTTTTTCAGAACCCAGCGGTGCAACAAATGATGGGTGAGAACCCTAACAACATGTGGAATATCAATAACATGCACCCTTCTTCTCAGCAAGCTTCTCCTTTCTTGTCCAATTTTCTATCTCCATATGCATCCACTCCTTCTTTTCCTTTTGCTTCTATGCGTGATAATGAAGAGGAGCTTCCTGAGTCATGGAGCCAGCTACTCATGAGTGGACTGGTGTCTGAAGAAGATAAAGCTGGTATGTGCCAAATGCTAAGTCAAGCTCCAAATGCTCCTTTTGTTGGTGTTAAGACAGAAGATTCGATAAACAGCTATGTATATGGGCATGGAAACGAAGAATTTGAGGCTGCAAAATCTACTATATGGTCTCAAATAGTGCCATCTTCTTCTCCCAAATCTTGTGTATCAAGTTTGAATAGCAGCATGTTGGATTTCACTAACAATATTAAAGTGGATGCAAGGTCTCCACCACTAGATCGATCTTCTGAGTGCAATAGCAGTGGTGGGGCACTGAAGAAAGCTAGGGTTGAACCATCAACAACTCAGTCTACCTTCAAGGTGAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAAATTGTTTCTCCGTTTGGAAAGACTGACACAGCCTCTGTCTTATTAGAAGCTATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTTGGCAATGGATCAGGAAACATGAGGCACCAACAACAACCTCTGCTGAATGAAAACTGCTTGAAGAGGAAAGCTCCCATTAACCAGGATTCTCAAGAAGAACCAAAGGATCTGAAGAGTAGAGGACTATGTTTGGTTCCAGTGTCATACACATTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCTTTTGGTGGAGGATTTCAGTAA 951 0.4238 MREAMDRGVFQNPAVQQMMGENPNNMWNINNMHPSSQQASPFLSNFLSPYASTPSFPFASMRDNEEELPESWSQLLMSGLVSEEDKAGMCQMLSQAPNAPFVGVKTEDSINSYVYGHGNEEFEAAKSTIWSQIVPSSSPKSCVSSLNSSMLDFTNNIKVDARSPPLDRSSECNSSGGALKKARVEPSTTQSTFKVRKEKLGDRITALHQIVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYFGNGSGNMRHQQQPLLNENCLKRKAPINQDSQEEPKDLKSRGLCLVPVSYTLQVGSDNGADYWAPAFGGGFQ* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1117 316 PANTHER OS05G0228400 PROTEIN 20 302 - -
Lan6g1117 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Lan6g1117 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 194 245 IPR036638 GO:0046983
Lan6g1117 316 Gene3D - 190 243 IPR036638 GO:0046983
Lan6g1117 316 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 302 - -
Lan6g1117 316 MobiDBLite consensus disorder prediction 162 191 - -
Lan6g1117 316 CDD bHLH_AtbHLH_like 192 241 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1117 Lan-Chr6 10946493 10953255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1117 5 270 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 37.719 1.78e-41 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1117 - - gmx:100777095 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1117 6 10946493 10953255 Lan6g1117 6 10946493 10953255 ECH
Lan6g1117 6 10946493 10953255 Lan3g0299 3 2032216 2037216 PCT
Lan3g0299 3 2032216 2037216 Lan6g1117 6 10946493 10953255 PCT