Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1090 ATGGCAAGTCGATTGAAGGAAGATGAGAAAAATGAAAAAATAATTCGAGGTCTTCTCAAACTTACACCGAATCGCAGGTGTATCAATTGCCACAGCTTGGGACCACAATATGTGTGCACAACTTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGAGAATTTACACATCGAGTAAAATCAGTTTCTATGGCTAAATTTACTTCACAAGAAGTTAGTGCACTTCAAGAAGGAGGAAATCGGCGTGCGAGAGAAGTTTATTTTAAAGAATGGGATGCACATCAGTCTTTACCTGATAGCAGTAATGTTGGCAGACTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGTGAAAGGGCCTATGACAAACCCCCAAGAGTGAAGACGGGCGATAGCGATGATTTAAATGAAAACAGGAGGATGGAGACGTCTCAGGGAGGATCTAAAAGCCCTCCATATGAGGACAAATTTGAACGTCGTTATAGTGACAGGTCTAGTCCTGGTGGAATAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGATTATAAGAGAAAACCCGGCCGTCCTGTAGTAATCAATGATTGGCGTCGTGAGGATAGATTTGGAGATGGAAGGAAATCTGATGATCGTAGAATATCTGATGGAGATATTAAGATGGACAGCCAATCTCCTGAGCGAGCCAAAGGTCTTGGTTCTTTAAGTCCACCTGTGGTCCGACCTGTTAGTGATATTTTGGGAGAAAACGTTGTACCGCTTCGAATCAGTGAACCCCCTAAAACAAACAGTGGAAAGGCTGCTAACAACTCAGTTCTAACACAGAGAAGTACATCCTCCAGTAGCTTGGCATCCAGTAATGGAAACCAGGCAGAAGTTAAGCTTGAAACTACTAAGAGCCTTATTGATTTTGAAGATGATCCTGAACCACCCGTGGCTCGACCTGTTGTGATGCCATTAAATTCTGGTGATAACAATTGGGCCTCCTTTGATTTTGCTCCTCAGGCAAAATCAGTTCAGGGTTCTTCAAATGCAAATCCACTTGAATCTGTGTTGTCTCAATTGTCTGTACCAGCAGCTTTAACTGCTCATGTGTCTGGAGCTCCAGCTGGTCCCAATCATGCAGCAGCTATTCCTGGGAGCAGTGTGTCTTTGGCAGGATCATCTCTTACTGCTGCCAGAGCTCCAACTATTAATAGCTTTTCAGCATTCCCACCTAGTGGTGCTTCAGTACCATATGCAGGATTGACAACAATATCATCACTCAATAATGCTGGACAGTTGGCTGGTTTACAGTATCAGCAACCTTCGTTCCCTGCAACTGTTAGTCAACCTACTGTTCATCAAGTTACACAACCAGTAGGTGGTGCTTCAAATAATCAGTCCTGGAATATACCTTCTGTACCGACAGTACAGGGGCATGCAAGCACATCAATACCACAAGCATCCCATAATGCCAATGAGCCTAGTGCCAGTGTTGTTTCACAACCTTCTACTGTAGATGTAAAACCAGTTGGAAGAACTGAACTTCCAGAGGATCTATTCACTGTAAAATATTCACCATTCCCTGCTCCAGTTCCAGGTTGGCAAATGGGTGCACCACTTGGCATGGGTACTTCAATTCAATATAACAATGTGGTGCCCATTCCAAGTTTTCCGCAACCATCAAAATCATCAAATCCATTTGATGTTAGCAACGAACCAACTCAGGTTCAGGCCTCAACTTTTCCTTCCATGTCATCTTTGCAAGGGGCTCTTCCTATCGTAACAACTCCAGTCTCAGTGCACCCTTCAAGCCTGGGTGATCCATCTTTTGCCTGGAACCTACCCTTATCATCATCATCATCCTATGCATCATTACTGCCTCCAGAAGCACAAACTCTCGCACCAGCAGTGGGACCAGGGGCATATATGGGACATCAAATGCCAACTAACACCCCAATACCAAGGTATGAAGGAATTGGGAGTTTTGGTGCTGATGGGGCTGCATTTGGCGTTTCCAATCCAGATCAGCAGCTAACTGGGTTGTCAACAATCCCTGCAACCACAAACCCCTTCCCTGCAGGAGGGAACCCATTCGGATAA 2103 0.4437 MASRLKEDEKNEKIIRGLLKLTPNRRCINCHSLGPQYVCTTFWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNRRAREVYFKEWDAHQSLPDSSNVGRLRDFIKHVYVDRRFTGERAYDKPPRVKTGDSDDLNENRRMETSQGGSKSPPYEDKFERRYSDRSSPGGISPGYDQESRQYGDYKRKPGRPVVINDWRREDRFGDGRKSDDRRISDGDIKMDSQSPERAKGLGSLSPPVVRPVSDILGENVVPLRISEPPKTNSGKAANNSVLTQRSTSSSSLASSNGNQAEVKLETTKSLIDFEDDPEPPVARPVVMPLNSGDNNWASFDFAPQAKSVQGSSNANPLESVLSQLSVPAALTAHVSGAPAGPNHAAAIPGSSVSLAGSSLTAARAPTINSFSAFPPSGASVPYAGLTTISSLNNAGQLAGLQYQQPSFPATVSQPTVHQVTQPVGGASNNQSWNIPSVPTVQGHASTSIPQASHNANEPSASVVSQPSTVDVKPVGRTELPEDLFTVKYSPFPAPVPGWQMGAPLGMGTSIQYNNVVPIPSFPQPSKSSNPFDVSNEPTQVQASTFPSMSSLQGALPIVTTPVSVHPSSLGDPSFAWNLPLSSSSSYASLLPPEAQTLAPAVGPGAYMGHQMPTNTPIPRYEGIGSFGADGAAFGVSNPDQQLTGLSTIPATTNPFPAGGNPFG* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1090 700 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Lan6g1090 700 MobiDBLite consensus disorder prediction 268 298 - -
Lan6g1090 700 PANTHER ARF GTPASE ACTIVATOR 1 700 - -
Lan6g1090 700 MobiDBLite consensus disorder prediction 476 506 - -
Lan6g1090 700 CDD ArfGap_AGFG 12 121 - -
Lan6g1090 700 SUPERFAMILY ArfGap/RecO-like zinc finger 11 122 IPR037278 -
Lan6g1090 700 MobiDBLite consensus disorder prediction 127 146 - -
Lan6g1090 700 MobiDBLite consensus disorder prediction 261 298 - -
Lan6g1090 700 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Lan6g1090 700 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Lan6g1090 700 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Lan6g1090 700 MobiDBLite consensus disorder prediction 127 247 - -
Lan6g1090 700 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 129 IPR001164 GO:0005096
Lan6g1090 700 Pfam Putative GTPase activating protein for Arf 13 123 IPR001164 GO:0005096
Lan6g1090 700 PANTHER ARFGAP/RECO-RELATED 1 700 IPR044820 GO:0005096
Lan6g1090 700 MobiDBLite consensus disorder prediction 185 231 - -
Lan6g1090 700 SMART arf_gap_3 12 129 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1090 Lan-Chr6 10574990 10601458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1090 15 121 C2H2 Transcription Factor Family AT4G21160 32.743 2.33e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1090 - - gmx:100815114 947.577