Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1077 ATGATCACAGATATGAAAGCTGCAAGTGCCTTGGCTGCTAAGACAGCAAGAGCTTGTGATAGCTGCCTAAGGAGAAGAGCAAGGTGGTTTTGTGCAGCTGATGATGCTTTCCTATGCCATGGTTGTGACTCTTTGGTTCACTCAGCAAACCAATTAGCCAATAGGCATGAAAGAGTTAAGCTTCAATCTGCATCAAACAAGGTAACAACAACAGCACAATCATGGCATAGTGGATTCACACGCAAGGCAAGAACCCCACGTAACAACAAGCACTTGGCACTTCAACAAAGACTCAAACACAAAGTGTTTTTCAACAATACTAATGTTCTTCCTATTGTACCTGAACTTGGAGGTGAAGAAGAACAAGTGTTTGATGATGAAGAGAGTGAGGAACAGATGCTATGCCGTGTGCCAGTGTTAGAACCATTTGATGCTGCTGCTGAGTTTTGCCATGTATACAACAATGGATTGAGTGTAGAAACTGATGCTGCTAATGAAGCAGCATCTGACTTAGACAGTTTTTCTGAGTTTCTGGCTTCAGACATGGATCTTTCTGAGTTTGCAGCTGATGTTCAAAGCTTACTTGGATCATCAGAACAAGTGTTTGATTGTAAAGAAGAATGTGAAATAGATGGAAGGGGAGCCAACGGTGCAAATGCAGTAATGAAGGTTAAAGATGAAGGACTTGATGAAGATACAGCATGTCATTTTGAATCAGTTTTTGACATGACAAATGAAGCCTTTGATTGGAACATTGATTCAGTGCTGTCATCAGCACCAACGGCTCCACCACAAGAGGAAAAGGCTGTGGTGTCGGTGGCGGCGCCGGAGAGTAAAATGGAAACAAAGAGGGACATAATTTTGAGACTAAAGTTAAACTATGAGGAAGTTATTACTGCTTGGGCTAGTCAAGGTTCTCCATGGACAACAGAAAACCCTCCTCGGTTCAACTTTGATGAATGCTGGCCAGATTTCTTGGATTCATCAAGTGGTGGAGATGTTCAATTCTCTTCTTATGGAGAATTAAGAAGCTTAAGGGGACACCTTGTAGATGAGGGAAGAGAAGCAAGAGTATCAAGGTATAGAGAGAAGAGAAGAACACGTTTGTTTGCAAAGAAGATAAGATATGAAGTAAGAAAGTTGAATGCAGAGAAAAGACCAAGAATGAAAGGTCGTTTTGTAAAGAGGACATGTTTTGTTGGAGGAGCCAATAATGCTTTTCACTGA 1227 0.4148 MITDMKAASALAAKTARACDSCLRRRARWFCAADDAFLCHGCDSLVHSANQLANRHERVKLQSASNKVTTTAQSWHSGFTRKARTPRNNKHLALQQRLKHKVFFNNTNVLPIVPELGGEEEQVFDDEESEEQMLCRVPVLEPFDAAAEFCHVYNNGLSVETDAANEAASDLDSFSEFLASDMDLSEFAADVQSLLGSSEQVFDCKEECEIDGRGANGANAVMKVKDEGLDEDTACHFESVFDMTNEAFDWNIDSVLSSAPTAPPQEEKAVVSVAAPESKMETKRDIILRLKLNYEEVITAWASQGSPWTTENPPRFNFDECWPDFLDSSSGGDVQFSSYGELRSLRGHLVDEGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGGANNAFH* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1077 408 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Lan6g1077 408 SMART bboxneu5 14 61 IPR000315 GO:0008270
Lan6g1077 408 Pfam CCT motif 354 396 IPR010402 GO:0005515
Lan6g1077 408 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 402 - -
Lan6g1077 408 CDD Bbox1_BBX-like 18 59 - -
Lan6g1077 408 Pfam B-box zinc finger 16 61 IPR000315 GO:0008270
Lan6g1077 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 1 402 - -
Lan6g1077 408 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1077 Lan-Chr6 10391997 10393827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1077 8 396 C2C2-CO-like Transcription Factor Family AT1G25440 41.725 8.86e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lan6g1077 zf-B_box 2.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1077 - - adu:107478728 485.723