Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1073 ATGGCTGAATTCAAAGCAGATTTGCAAAGTTTCAGACCCATATTTCCTTTGTTAAACATTGATAGCATGGAATTTATCAATCAATTAGAAACAGTGAACCCACATGTCTTGGATAACTCAAATTTCAACTACATGATGCCTTTCTCTAGTGACACCATTTTTGGTGGTTCTACACAACCTGAACTTCCAACAAACTTGGAAGAAAACTTTTCAGGCCTTGTCTATTATGTCAATTACAATGCTGTTCCAGCTTCACTTTCCATTTCTTCATCAAAAAATGATACCCATGAAGATAAAAAGAGGAAAGCAACAATGGATAATATGACAAAAACCAGTTCTTTAAACTCAACTCATGCAGTTTCTAAAAATGATTGTGGAGGAGTGAAGAAGGTGAAAAGGGTTGTAACCGAAAACAAGGAATCAAAGGAAGTAGTTCATGTTAGAGCCAGAAGAGGCCAAGCTACTGATAATCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGATAAACTTAGGTGCTTACAGAACATTGTCCCAGGATGTCACAAGACCATGGGGATGGCAATAATGTTTGATGAGATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCTATGAAGCTTAGTGCAGCAAGTACCTTTTATGACTTCAATTCAGACACAGATGCTTTAGAAATAATACAGAGAGAAAGAGCATCCGAGGCAGAAGATTATGTGAGAGAAGGATAA 747 0.3748 MAEFKADLQSFRPIFPLLNIDSMEFINQLETVNPHVLDNSNFNYMMPFSSDTIFGGSTQPELPTNLEENFSGLVYYVNYNAVPASLSISSSKNDTHEDKKRKATMDNMTKTSSLNSTHAVSKNDCGGVKKVKRVVTENKESKEVVHVRARRGQATDNHSLAERVRRGKINDKLRCLQNIVPGCHKTMGMAIMFDEIINYVQSLQHQVEFLSMKLSAASTFYDFNSDTDALEIIQRERASEAEDYVREG* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1073 248 Pfam Helix-loop-helix DNA-binding domain 157 186 IPR011598 GO:0046983
Lan6g1073 248 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 221 IPR036638 GO:0046983
Lan6g1073 248 PANTHER TRANSCRIPTION FACTOR BEE 1 2 243 - -
Lan6g1073 248 SMART finulus 159 209 IPR011598 GO:0046983
Lan6g1073 248 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 243 IPR024097 GO:0006355
Lan6g1073 248 CDD bHLH_AtBPE_like 143 228 - -
Lan6g1073 248 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Lan6g1073 248 Gene3D - 149 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1073 Lan-Chr6 10358397 10360057 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1073 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 42.366 2.17e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g1073 HLH 0.00021 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1073 - - aprc:113855800 291.197