Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1072 ATGTCCACATTAAAGAGCCTTAGCATTTCTAGTGAAGATGATAATGAACTTAGAAGAGGACCTTGGACTCATGAAGAGGATAATCTGCTTGTTCAATACATTGCTGATCATGATGAAGGGCGATGGAATTTGCTGGCTAAACGTTCAGGTTTAAAGAGAACGGGAAAAAGTTGTAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTAAAGCGAGGAAATTTAACCATTGAAGAGCAGCTTCTTATTCTTGAACTCCACTCAAGGTGGTCAAAAATTGCACAACATTTGCCTGGTAGGACAGATAATGAAATCAAGAACTTTTGGAGGACTAAAATTCAGAAACAAGCAAAATATTTGAAAATTGACATAAATAGCATAGAATTTCAAGACCTTATTAGACATTTATGGATACCAAAATTGCTTCAGAAAGCAAAAGAATCATTTTCTTCATCCATATCAATCCAAAACCAAACAATTCCTATGCCTCTTGATAATGATTCTCAATATTCAACCATACCAACACAAATCCCTTGTCAAGGACCTTGTATCAATGAACTATCAGGTCCTAATCATTTGGAACAACATGAGCAGAACTCTGATTCTGAGCACAACAATGGTTCATGCATCTCATTTTCTGAATCAGCAAATATCTCAAAAGTGCCTAATCTTTTGGGATACACAATCAATCAATTTCATGGTTTAGGTGCTAATGACTTTGGGCCTCTCACTTATGATGGGTATGATGTAAATAACTGTGCCTATGAGATGGACACCTTCAACATGGCAAGTACAAATAGTGATTGCCAAATGCTAGATAGCAATTGGGTAAACAAAGATTTTGCATGTAGAATGTTTGACCAGACATGGAGTATGGATGAATTATGGCAACATAGTCATTTACAAGAATAA 912 0.3586 MSTLKSLSISSEDDNELRRGPWTHEEDNLLVQYIADHDEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTIEEQLLILELHSRWSKIAQHLPGRTDNEIKNFWRTKIQKQAKYLKIDINSIEFQDLIRHLWIPKLLQKAKESFSSSISIQNQTIPMPLDNDSQYSTIPTQIPCQGPCINELSGPNHLEQHEQNSDSEHNNGSCISFSESANISKVPNLLGYTINQFHGLGANDFGPLTYDGYDVNNCAYEMDTFNMASTNSDCQMLDSNWVNKDFACRMFDQTWSMDELWQHSHLQE* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1072 303 Gene3D - 19 71 - -
Lan6g1072 303 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g1072 303 SUPERFAMILY Homeodomain-like 17 109 IPR009057 -
Lan6g1072 303 Gene3D - 75 128 - -
Lan6g1072 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 70 IPR017930 -
Lan6g1072 303 PANTHER OS01G0128000 PROTEIN 10 297 - -
Lan6g1072 303 CDD SANT 78 111 IPR001005 -
Lan6g1072 303 SMART sant 71 115 IPR001005 -
Lan6g1072 303 SMART sant 18 68 IPR001005 -
Lan6g1072 303 Pfam Myb-like DNA-binding domain 72 111 IPR001005 -
Lan6g1072 303 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Lan6g1072 303 ProSiteProfiles Myb-like domain profile. 67 113 IPR001005 -
Lan6g1072 303 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 10 297 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan6g1072 303 CDD SANT 21 66 IPR001005 -
Lan6g1072 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 117 IPR017930 -
Lan6g1072 303 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1072 Lan-Chr6 10347942 10349499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1072 4 246 MYB Transcription Factor Family AT2G47190 43.701 1.09e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g1072 Myb_DNA-binding 6.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1072 K09422 - gmx:778045 434.491