Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1064 ATGGCGACGCCGTTCACCGGACACTTGGACGGAGGAGGAGGACTGGCGGTGCTATCGAACGCCGTCAATAAGGTTGATTCTTCATCCTCCGTGCTCAATGGCGGCGCCGACTTGAAGAAGTGCGCTCAATTAGATTCGCCGATTTTGATTTTCTTGTTCTTCCACAAAGCGGTTCGGAATGAGCTCGACGCGCTTCACCGATTGGCTATGGCTTTTGCCACCGGTAACCGCTCTGACATTGATGCGCTCCGTGAGCGGTACCATTTCCTCAGCTCGATTTATAGGCATCACTCCAATGCGGAAGATGAGGTGATTTTTCCAGCTCTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTTGAACACAAGGGTGAAAGCAATCTTTTTGATCATCTATTTGAGCTGTTAAATTCTTCCACCGATATTGGTGATAGTTTCCCGAGAGAGTTAGCATCATGCACGGGAGCTTTGCAGACGTCAGTTAGTCAACACATGGCGAAGGAAGAGGAGCAGGTATTTCCTCTGCTTATTGAGAAGTTCTCTGTTGAGGAGCAGGCATCTTTAGTTTGGCAGTTTCTTTGTAGCATTCCTGTGAATATGATGGCAGAATTTCTTCCATGGCTTTCAACATCTATCCCCCCTGATGAAAGTCAGGATCTGCGAAATTGCTTAATCAAGATAGTGCCAGAGGAAAAGCTTCTTCAAAAGGTTATTTTCAGCTGGATGGAAGGGAGAGGTAGTGTCAACTCGGTTGAAAATCATGTAGACCATTCTCAAGTTCGAAGTAATTCTAACTCGTTAACCCATCAGGTTGAAAAAGTAATCTGTTCATGTGAGTCTACCACAACAGGGAAAAGGAAATATTGTGGATCTAGGCTAGATGTTTCTGATACTGCAGGAACACATCCTATAGATGAAATATTGCTCTGGCACAATGCAATAAAAAAAGAGTTAAGTGAGATAGCAGTGGAGACCAGAAAGATACAACATTCTGGAGATTTTACTAATCTATCAGCTTTTAATGAAAGATTGCAATTCATTGCTGAAGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCAGCAATAGATGGAGAATTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTTCGGTCTTTGATTGAAGGTATTCAAAGCGAAGGAGCAACATCTAATTCAGAAGTTGAATTTTATTCCAAGTTATGTTCAATTGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAGTGAAGAAGTTCAGGTTCTTCCACTTGCAAGAAAGCACTTTAGCTTTAGAAGGCAACGTGAACTTCTGTATCAAAGCTTATGCATGATGCCTCTCAAATTGATTGAGCGTGTCCTGCCATGGTTGATAGGATCATTAACTGAAGATGAGGCAAAGATGTTTCTGAGGAACATGCAATTAGCAGCTCCAGCTACGGATTCTGCTCTAGTCACACTCTTTTGTGGTTGGGCTTGCAAGGCTCGTAATGAAGGTCTGTGTTTGTCTTCAAGTGCATCAGGTTGCTGTCCTGCTCAAAGACTTCCTGATATTGAAGAAAATATTGTTCAACCATCATGTTCTTGTGCTGCATCACCTGGCAGAGATTGCTCAGAATCATCTGAATCAGATGGGAACAAAAGATCCGTGAAGAGAAATATATTAAAATTGGACAAGAGTGGAGATTTACCTGAAACTTCGGAGACTGAAACTATCCAGAAACAATGCTGTAGTGCTCGCCCTTGTTGTGTGCCAGGTTTAGGAGTAAGCAGTAACAATTTTGGGCTGAGTTCTCTTTCTACAGCTAAGTCGTTGCGCTCCTTGTCTTTCAGCTCTTCTGCCCTATCTCTTAATTCCAGTCTTTTTGCATGGGAAACAGAGAGCATCTCATTTGATGCTGGCTCTGCACAAAGACCAATCGATACCATATTTAAATTCCATAAAGCTATACGCAAGGACTTGGAGTATCTAGATGTTGAGTCTGGAAAGCTTAGTGATGGTGATGATACAACCCTTAGGCAATTTAGTGGAAGATTTCGCCTTTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTCCCTGCATTGGAGTCTAAAGAGGCACTCCACAATGTGAGTCATTCATACATGCTGGACCATAAGCAGGAAGAACAATTGTTTGAAGATATTTCCCGTGTTCTTTCTGAGCTTTCTGCCCTTCATGAAGCCTTGCATACCCATATGTCAGAGGGTTTAGGTGAAGGTAGTCTTGGAACTTCTGATACCAATGGTAGTGATATTATCAAAAATTATAATGAGCTTGCAACTAAGCTTCAAGGGATGTGCAAATCCATAAGAGTGTCCCTAGACCAGCATATTTTCAGGGAAGAGAGTGAACTCTGGCCACTGTTCGGTAGACATTTCACTGTGGAAGAACAAGACAAGATAGTAGGCCGGATAATTGGAACAACGGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACTTCTGCACTTACTCAAGATGAACAGAACAAAATGATGGACACATGGAAGCAGGCAGCTAAGAATACAATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGCCTACATCACAGACAGAAACATCAGATCATGGCACTACTCAAAGAGGTGCTGAACATCAAGAAAGCTTGGATCCCAATGATCAGATGTTCAAGCCCGGTTGGAAAGACATATTCCGGATGAATCAGAACGAACTTGAGTCAGAGATCCGAAAGGTTTATCGGGACTCAACTCTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTAATGACAAGTCGTTGGATAGCTGCCCAGCAGAAATTACCTAGAAACCTGTCAGAAGAGTCATCTAAGGGTGAAAAAATAGAAGGACACTCACCATCATTTCGGGACCCAGGGAAACATGTATTTGGGTGTGAGCACTATAAGAGAAATTGCAAGCTTCTAGCTGCATGTTGTGGGAAATTATTTACTTGCAGATTTTGTCATGACAACGTGAGCGATCATTCTATGGATAGAAAAGCAACATCGGATATGATGTGTATGCGCTGCCTGAATATACAGCCAGTAGGGCCTATATGCATGACTCCCTCGTGTAATGGACTTTCAATGGCAAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAATGTATATCACTGTCCATTTTGCAATTTATGTCGTGTTGGGCAAGGGCTTGGGATAGATTATTTTCATTGCATGAAATGCAACTGTTGCTTGGGGATAAAATCAGCAACCCACAAATGCCTCGAGAAAGGTTTAGAAATGAACTGCCCGATTTGCTGTGACGATTTATTCACATCAAGTGCTACAGTCAGAGCTCTACCCTGTGGCCATTATATGCATTCTGCTTGCTTTCAGGCATACACTTGTAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCTTATTGGCCGCAGAGGAGCTTCCTGAAGAGTATAGGGACCACAATCAGGACATACTCTGCCATGATTGTGACCGGAAGGGCATTTCATGCTTCCATTGGTTATATCACAAATGTGGATTTTGCGGCTCGTACAATACCCGAGTGATCAAGTCTGAGACATCAAATTCCAGCTGCACTTAG 3732 0.4226 MATPFTGHLDGGGGLAVLSNAVNKVDSSSSVLNGGADLKKCAQLDSPILIFLFFHKAVRNELDALHRLAMAFATGNRSDIDALRERYHFLSSIYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNSSTDIGDSFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSVEEQASLVWQFLCSIPVNMMAEFLPWLSTSIPPDESQDLRNCLIKIVPEEKLLQKVIFSWMEGRGSVNSVENHVDHSQVRSNSNSLTHQVEKVICSCESTTTGKRKYCGSRLDVSDTAGTHPIDEILLWHNAIKKELSEIAVETRKIQHSGDFTNLSAFNERLQFIAEVCIFHSIAEDKVIFPAIDGEFSFFQEHAEEESQFNDFRSLIEGIQSEGATSNSEVEFYSKLCSIADHIMETIQRHFHSEEVQVLPLARKHFSFRRQRELLYQSLCMMPLKLIERVLPWLIGSLTEDEAKMFLRNMQLAAPATDSALVTLFCGWACKARNEGLCLSSSASGCCPAQRLPDIEENIVQPSCSCAASPGRDCSESSESDGNKRSVKRNILKLDKSGDLPETSETETIQKQCCSARPCCVPGLGVSSNNFGLSSLSTAKSLRSLSFSSSALSLNSSLFAWETESISFDAGSAQRPIDTIFKFHKAIRKDLEYLDVESGKLSDGDDTTLRQFSGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEQLFEDISRVLSELSALHEALHTHMSEGLGEGSLGTSDTNGSDIIKNYNELATKLQGMCKSIRVSLDQHIFREESELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQAAKNTMFNEWLSECWKESPVPTSQTETSDHGTTQRGAEHQESLDPNDQMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPRNLSEESSKGEKIEGHSPSFRDPGKHVFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSDMMCMRCLNIQPVGPICMTPSCNGLSMAKYYCNICKFFDDERNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSATHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDHNQDILCHDCDRKGISCFHWLYHKCGFCGSYNTRVIKSETSNSSCT* 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1064 1243 MobiDBLite consensus disorder prediction 883 913 - -
Lan6g1064 1243 Pfam Ring finger domain 1126 1168 IPR001841 -
Lan6g1064 1243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1122 1171 IPR013083 -
Lan6g1064 1243 Pfam CHY zinc finger 998 1073 IPR008913 GO:0008270
Lan6g1064 1243 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 34 1242 - -
Lan6g1064 1243 Pfam Hemerythrin HHE cation binding domain 304 438 IPR012312 -
Lan6g1064 1243 Pfam Hemerythrin HHE cation binding domain 52 178 IPR012312 -
Lan6g1064 1243 Pfam Hemerythrin HHE cation binding domain 652 814 IPR012312 -
Lan6g1064 1243 Gene3D - 1197 1239 - -
Lan6g1064 1243 SMART ring_2 1127 1168 IPR001841 -
Lan6g1064 1243 CDD Hr-like 50 176 - -
Lan6g1064 1243 ProSiteProfiles Zinc finger CHY-type profile. 991 1060 IPR008913 GO:0008270
Lan6g1064 1243 SUPERFAMILY CHY zinc finger-like 993 1054 IPR037274 GO:0008270
Lan6g1064 1243 Gene3D nmb1532 protein domain like 43 196 - -
Lan6g1064 1243 Gene3D nmb1532 protein domain like 307 454 - -
Lan6g1064 1243 CDD Hr-like 307 436 - -
Lan6g1064 1243 CDD RING-H2_Pirh2 1126 1169 - -
Lan6g1064 1243 ProSiteProfiles Zinc finger RING-type profile. 1127 1169 IPR001841 -
Lan6g1064 1243 CDD Hr-like 654 813 - -
Lan6g1064 1243 SUPERFAMILY RING/U-box 1124 1173 - -
Lan6g1064 1243 Pfam Zinc-ribbon 1174 1231 IPR039512 -
Lan6g1064 1243 ProSiteProfiles Zinc finger CTCHY-type profile. 1063 1126 IPR017921 -
Lan6g1064 1243 PANTHER CHY ZINC FINGER PROTEIN 34 1242 - -
Lan6g1064 1243 SUPERFAMILY Zinc hairpin stack 1064 1120 IPR037275 -
Lan6g1064 1243 Gene3D nmb1532 protein domain like 647 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1064 Lan-Chr6 10284969 10296479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1064 1 1243 C2H2 Transcription Factor Family AT3G18290 66.217 0.0 1669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1064 6 10284969 10296479 Lan3g0340 3 2423693 2434102 PCT
Lan3g0340 3 2423693 2434102 Lan6g1064 6 10284969 10296479 PCT