Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1052 ATGGATGACGTTAAAGACAAAGTAAAGGGTTTCATGAAAAAAGTCAACAACCCTTTTTCCTCTTCATCCTCCTCTCCCAAATTCAAAGGCCAAGGTAGAGTTTTGGGTTCTTCTTCATCTTCTTCACCCACCAATTCAATTCCCAATTCAAAATCGTCTTCTGCTCCAACCAATCACAAACTCACTTCTTCTCCAACTAATCCCAAACCCTTGCCTCAAAAAAACATCAAATCCGATCAGAATGGGATCCAGAAAGGTGAAAAATCGGATCTTGATCGCAAACCTCGAAATGGGTTTGACCCTTTTGATTCTCTGGTTACTACAGGGAAGAGATCTCAAAATGGGTATTCACTCAACGTTTATGAATGCCCCATTTGTGGAAAATCATTTAGATCTGAAGAAGAGGTTTCTGAACATGTGGATAGTTGTTTGAGTAATCCAATTGAAAGTGATGATGGAAATGTTGTTGTCTCTGAGAAGAAGAATGAAATTGAGTGGAATAATGGTGAATTGGAGGTTTGTGTTGGTACTTATATTTCAGGGAACCCATCTGAGGGATCAGTTGATGTTGTTCTCAAATTGTTGAGGAATATTGTTAGGGAGCCGGATAATGCGAAATTTCGGAGGATCAGGATGAGTAATCCAAAGATAAAAGAGAGTGTTGGTGAGGTTATGGGTGGAGTCGAGTTGCTGGGTTTTGTGGGTTTTGAAATTGGGGAGGAGAATGGAGAGACTTGGGCAGTGATGGAGGTTCCTAAAGAGGAGCAGATAAAATTGATTAAGAAATCAATTGTGTTACTTGAATCACAATTGGTTCAAGAACCTGCAAAAAAGGAGAATTTGGTGCATGCAGCTTCTGCTGAGATAGATGCAAAGGCCGATGAACTGGAGCAGGTCGACAGACAGGTGAAGGTCTTCTTTTCCGTTCCTGAAAGCGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAAGCTTGGAGCTGAAGAGGTGAGAAGAGAAGCTGAATTAAGGAGAAAAAGGCTTGAAGAGTCTCAGCTTTTAATCCCTAAATCACTTAAAGAAAAGCAAGCAAAAGCTGCCAGGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGTGTATTTTCTCCACTTGAACCAACTACTGCTCTTTATGAGTTTGTTAGCTCAGCATTAAAAGAACTGGCTTTGGAATTTGAGCTAATCCATCCTGTACTTATCAAACGACGAGTGATCCCTCATTTTCCAAAACCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGATCTGGTACCTTCAGCTCTAGTTAAGTTCAAGCCCCTGGAAACAGATTCTGTTGTTTTCACTGGTCTCAAAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATGGTTAA 1425 0.4014 MDDVKDKVKGFMKKVNNPFSSSSSSPKFKGQGRVLGSSSSSSPTNSIPNSKSSSAPTNHKLTSSPTNPKPLPQKNIKSDQNGIQKGEKSDLDRKPRNGFDPFDSLVTTGKRSQNGYSLNVYECPICGKSFRSEEEVSEHVDSCLSNPIESDDGNVVVSEKKNEIEWNNGELEVCVGTYISGNPSEGSVDVVLKLLRNIVREPDNAKFRRIRMSNPKIKESVGEVMGGVELLGFVGFEIGEENGETWAVMEVPKEEQIKLIKKSIVLLESQLVQEPAKKENLVHAASAEIDAKADELEQVDRQVKVFFSVPESVAAKIELPDSFYKLGAEEVRREAELRRKRLEESQLLIPKSLKEKQAKAARKRYTRTIIRIQFPDGVVLQGVFSPLEPTTALYEFVSSALKELALEFELIHPVLIKRRVIPHFPKPGENAKTIEEEDLVPSALVKFKPLETDSVVFTGLKNELLEISEPLVNG* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1052 474 CDD PUB 184 269 - -
Lan6g1052 474 Gene3D - 357 450 - -
Lan6g1052 474 ProSiteProfiles Zinc finger CCHC NOA-type profile. 115 145 IPR034735 GO:0070530
Lan6g1052 474 Pfam UBX domain 364 419 IPR001012 GO:0005515
Lan6g1052 474 Gene3D - 180 268 - -
Lan6g1052 474 ProSiteProfiles UBX domain profile. 363 447 IPR001012 GO:0005515
Lan6g1052 474 Gene3D Classic Zinc Finger 117 147 - -
Lan6g1052 474 SUPERFAMILY PUG domain-like 183 268 IPR036339 -
Lan6g1052 474 Coils Coil 282 302 - -
Lan6g1052 474 MobiDBLite consensus disorder prediction 15 80 - -
Lan6g1052 474 SUPERFAMILY Ubiquitin-like 332 447 IPR029071 -
Lan6g1052 474 MobiDBLite consensus disorder prediction 81 99 - -
Lan6g1052 474 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 473 - -
Lan6g1052 474 SMART PGNneu 186 253 - -
Lan6g1052 474 Coils Coil 325 345 - -
Lan6g1052 474 Pfam PUB domain 185 261 IPR018997 -
Lan6g1052 474 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 139 IPR013087 -
Lan6g1052 474 MobiDBLite consensus disorder prediction 1 108 - -
Lan6g1052 474 SMART c2hc_5 120 144 IPR006642 GO:0003677|GO:0006281
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1052 Lan-Chr6 10132843 10136966 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1052 1 395 C2H2 Transcription Factor Family AT2G01650 55.000 1.14e-137 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g1052 UBX 3.2e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1052 K14011 - gmx:100779271 611.298