Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1049 ATGAACAGAGGCAAGTTTGTTATGGCTACTTCCAAGACGGCAATGTCTTCCTTAACCCACTTGCGTCATCTAACATGCGCCGCTTCAGCATCTTCTTCTTATCCTGCACGACTAGTGCCCGAACCACCTAATCTCATCGCATGGGTAACCAGAGAAGGTGGCTACGTGCACCCCGCGGTGAAGATAGCACACTCTCACCACTTCAATGGTCTTGGACTAGTGGCCAATTATCAAATTCCAATTGGCACTGACCTTATTGTTCTCCCAGATCATATTCCTTTGAGTTTTAGGTCTTTTGAATCTGAAGATAGCGTTGATTCTGCGTTGGCTCAATTGGCACGCCAAGTTCCTGAGGAACTATGGGCAATGAAACTTGGTTTGAAGCTTCTACAAGAAAGAGCAAAAGTTGGATCATTTTGGTGGCCATATATAAGCAATCTCCCAGAAACATACAGTGTGCCTATCTTTTTTCCCGGGGAAGACATAAAGAACTTGCAGTATGCTCCTGTTCTTCACCAGGTAAACAAAAGATGTCGGTTTCTTCTTGATTTTGAGCAAGAAATCAAGCGCGCCGTAGTTAATCTTGAACCAGAAAAGCATCCTTTTGGTGGTCTAGAAGTGCATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTTTCATCTAGAGCATTCCGGTTATACGGCAACAAACGACCAGATGGAGTCCACATTGATGTACCCATGATGCTCCCTCTCATTGATATGTGCAACCATAGTTTCAGCCCAAATGCCAGAATTGTTCAGGAACAAGATGCCGATAACATGAAGATGCAAGTGAAGGTTGTGGTTGAGATGGCTATCAAAGAAGATGAGCCTTTATTACTTAACTATGGCCGTTTAAGCAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACACTCAAACCCTTATGACTGTATTGAGCTCAAATATAATGGTGCTCTTCTGGATGCTGCAAGCACGGCAGCTGGAGTTTCTTCATCAAACTTCTCAGCACCTGCTCCATGGCAGGAACTGATTTTATCTCAGCTAAATCTAGCTGGAGAAGCTCCAGACCTCAAGGTAACAATAGGTGGTCAAGAAATAGTAGAGGGCCGCTTGTTGGCTGCAATGAGAGTACTCCTAGCAAGTGATATGGAAAGTGCACAAAACTATGACCTGAACTCACTCAAGTCTTTATCAGCTGAAGCTCCACTTGGTGTTGCAACTGACATAGCTGTATTTCGCACCCTAATTGCTCTCTGTGTCATTGCACTAGGACATTTCCCTAGCGAAGTAACGGATGATGTATCACTGTTGGAGCAGGGAGTTTCAGAATCAGCTGAGTTAGCCATTCAGTTCAGAATCCAAAAGAAATCTGTGATTGTAGATGTAATGAGAGATCTCTCAAGGAGGGTAAAGCTTCTCTTGTCAAAGGAAACAGTGACTGCTGAAGAAGATAAGTGA 1467 0.4363 MNRGKFVMATSKTAMSSLTHLRHLTCAASASSSYPARLVPEPPNLIAWVTREGGYVHPAVKIAHSHHFNGLGLVANYQIPIGTDLIVLPDHIPLSFRSFESEDSVDSALAQLARQVPEELWAMKLGLKLLQERAKVGSFWWPYISNLPETYSVPIFFPGEDIKNLQYAPVLHQVNKRCRFLLDFEQEIKRAVVNLEPEKHPFGGLEVHASSLGWAMSAVSSRAFRLYGNKRPDGVHIDVPMMLPLIDMCNHSFSPNARIVQEQDADNMKMQVKVVVEMAIKEDEPLLLNYGRLSNDFFLLDYGFVIHSNPYDCIELKYNGALLDAASTAAGVSSSNFSAPAPWQELILSQLNLAGEAPDLKVTIGGQEIVEGRLLAAMRVLLASDMESAQNYDLNSLKSLSAEAPLGVATDIAVFRTLIALCVIALGHFPSEVTDDVSLLEQGVSESAELAIQFRIQKKSVIVDVMRDLSRRVKLLLSKETVTAEEDK* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1049 488 Gene3D - 341 487 IPR036464 -
Lan6g1049 488 Gene3D set domain protein methyltransferase, domain 1 9 304 - -
Lan6g1049 488 PANTHER F21J9.27 12 483 - -
Lan6g1049 488 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 12 483 - -
Lan6g1049 488 Pfam Rubisco LSMT substrate-binding 340 461 IPR015353 -
Lan6g1049 488 ProSiteProfiles SET domain profile. 58 291 IPR001214 GO:0005515
Lan6g1049 488 SUPERFAMILY SET domain 41 309 IPR046341 -
Lan6g1049 488 Pfam SET domain 70 291 IPR001214 GO:0005515
Lan6g1049 488 SMART set_7 58 297 IPR001214 GO:0005515
Lan6g1049 488 CDD SET_LSMT 59 305 - -
Lan6g1049 488 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 301 480 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1049 Lan-Chr6 10010238 10015209 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lan6g1049 SET 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1049 - - lang:109349738 964.14