LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g1045	ATGGCTGAACGTGGCGGCGACCGTGGTGGATTCGGCCGAGGCTTCGGCGACAGAGGCCGTGGAGGTCGCGGAGACAGAGGCCGTGGTGGCAGACGCCGTGGACCCCGTCGTGAAGAGGAGGAAAAGTGGGTCCCAGTCACCAAACTTGGCCGTCTCGTAAAAGACGGTAAAATCCGTTCCCTTGAACAGATCTATCTCCACTCACTCCCAATCAAGGAGCACCAAATCATCGATACCTTAGTGGGTCCCTCTTTGAAAGATGAGGTCATGAAAATCATGCCGGTTCAGAAACAAACCCGTGCTGGTCAGCGAACCCGGTTCAAGGCTTTTGTTGTTGTTGGTGATAACAATGGCCACGTTGGACTCGGTGTTAAGTGTAGTAAGGAGGTTGCAACCGCTATTCGTGGTGCGATTATTCTTGCGAAGCTTTCGGTGATTCCGGTGAGGAGAGGTTATTGGGGAAACAAGATTGGGAAGCCTCACACTGTTCCTTGCAAGGTTACTGGGAAGTGTGGTTCTGTTACTGTGAGGATGGTTCCAGCACCTCGTGGTTCTGGAATTGTTGCTGCTAGGGTTCCTAAAAAGGTTCTTCAGTTTGCTGGGATTGATGATGTTTTTACTTCATCTAGGGGATCCACCAAAACTCTTGGAAATTTCGTCAAGGCCACATTTGACTGTCTGCTGAAAACCTATGGTTTCCTAACACCTGAATTCTGGAAGGAGACTCGTTTCTCCAAATCTCCATTCCAAGAGTACACAGATCTATTGGCAAGGCCTACAACAAAGGCTCTCATCCTAGAAGAGGAGAAGGTGCCCGCTGAAGTTTAA	828	0.4988	MAERGGDRGGFGRGFGDRGRGGRGDRGRGGRRRGPRREEEEKWVPVTKLGRLVKDGKIRSLEQIYLHSLPIKEHQIIDTLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLLKTYGFLTPEFWKETRFSKSPFQEYTDLLARPTTKALILEEEKVPAEV*	276

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g1045	275	ProSiteProfiles	S5 double stranded RNA-binding domain profile.	85	148	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Lan6g1045	275	Pfam	Ribosomal protein S5, N-terminal domain	85	149	IPR013810	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Lan6g1045	275	PANTHER	RIBOSOMAL S SUBUNIT	1	271	IPR000851	GO:0003723\|GO:0003735\|GO:0005840\|GO:0006412
	Lan6g1045	275	MobiDBLite	consensus disorder prediction	1	24	-	-
	Lan6g1045	275	MobiDBLite	consensus disorder prediction	1	41	-	-
	Lan6g1045	275	PANTHER	40S RIBOSOMAL PROTEIN S2-1-RELATED	1	271	-	-
	Lan6g1045	275	Gene3D	-	42	147	-	-
	Lan6g1045	275	Gene3D	-	148	241	IPR014721	-
	Lan6g1045	275	SUPERFAMILY	Ribosomal protein S5 domain 2-like	161	241	IPR020568	-
	Lan6g1045	275	Pfam	Ribosomal protein S5, C-terminal domain	169	241	IPR005324	GO:0003735\|GO:0005840\|GO:0006412
	Lan6g1045	275	SUPERFAMILY	dsRNA-binding domain-like	81	150	-	-
	Lan6g1045	275	TIGRFAM	uS5_euk_arch: ribosomal protein uS5	38	245	IPR005711	GO:0003735\|GO:0006412\|GO:0015935
	Lan6g1045	275	ProSitePatterns	Ribosomal protein S5 signature.	102	134	IPR018192	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g1045	Lan-Chr6	9975051	9976878	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g1045	39	259	Cytoplasmic Ribosomal Protein Gene Family	AT3G57490	92.308	3.47e-152	424

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g1045	K02981		-	gmx:100820352	468.774

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan17g0906	17	11892194	11893998	Lan6g1045	6	9975051	9976878	LSH