Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1043 ATGCACACTAGAAGGAAATTCCTCTACTTCTTCTCAACTCACAACATTTCTCAATCCAGAATTTCCCACCAACTCAATGCATTTTCTCAATTAAACCCTTTTTATGAAACCCCCAAAACCCTAAACCCTTTTAGGGTTTTACCACAATACGCACCGTTTTCTACGCAAGCTTCAAAATTTCCCGAATACGAGATGCCAACTGTGACATGGGGCGTGATTCAAGGCCGAAAAGAGAAACTCGTGTCGCGCGTGATCGTTTTCGATTACCTCAAGGGTTTAGGAATAATCCCTGATGAACTTCAAGACCTAGAACTTCCTTCAACCGTTGAAGTGATGAGAGAGCGCGTGGAGTTTCTTATGAAATTAGGGTTAACAGTTGATGACATCAATGAATACCCTTTGATGTTAGGATGCAGTGTAAGAAAAAATATAATCCCAGTTTTGGGGTACTTAGAAAAAATTGGGATTCCAAGATCCAAACTTGGTGAGTTTATAAATAGTTACCCTCAAGTGCTTCATGCTAGTGTTATTGTTGAGCTTGTTCCTGTTGTTAGATTCCTTAGAGGACTAGATGTTGAGAAAGATGATATTGGGTATGTGTTGCAAAAGTACCCTGAACTTTTAGGGTTCAAGCTTGAAGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGCGTTGGTGTTAATCCTAGAGATATTGGTCCAATGGTGACTCAGTATCCTTATTTATTGGGTATGAGAGTTGGGACTGTGATAAAGCCTATGGTTGATTACTTAGTTAGTTTGGGGTTGCTGAAGAAGATTTTAGCTAGGATGTTGGAGAAGAGAGCTTATATACTTGGTTACGATCTTGAAGAGACTGTGAAACCAAATGTGGATTGTTTGATTAGTTTTGGTGTGAGGAGGGAATGTTTGGCTTCGGTTATTGCTCAGTATCCTCAGATTATCGGGCTGCCGCTTAAGGCGAAGTTGTCTTCGCAGCAGTACTTTTTTAGTTTGAAGCTTAAGATCGACCCTGAAGGGTTTGCGCGAGTGATGGAGAAGATGCCACAGGTGGTTAGTCTTCACCAAAATGTGATTATGAAGCCGGTTGAGTTCCTCATTGGAAGGGGGATACCGGCTAGCGATGTGGCTAGTATGGTGATCAAGTGTCCTCAGTTGGTAGCGGTGCGAGTTGAGCTGATGAAGATAAGTTATTACTTTTTCAAAAGTGAGATGGGTAGACCGATGAATGAGCTTGTGGAGTTCCCGGAATACTTTACTTATAGTTTGGAATCGAGGATCAAACCTAGATACCAGCGGCTAAAAAGCAAGGGGATAAGGTGTTCATTAAATTGGATGCTGAATTGCAGTGACCAGAGATTTGAAGAGAGATTACAGGGTAATTACATTGAAACAGAAAGTGTAGGTCCTTCATTCAATATGGGTGGGAAGTTAGATCTACCAGGTAATGCTATAGTGTCTGATGATGAAGAGGAGAGTGATGATGAAGTTTTATACAGACGAACTGTTTCTCTGTAG 1521 0.4109 MHTRRKFLYFFSTHNISQSRISHQLNAFSQLNPFYETPKTLNPFRVLPQYAPFSTQASKFPEYEMPTVTWGVIQGRKEKLVSRVIVFDYLKGLGIIPDELQDLELPSTVEVMRERVEFLMKLGLTVDDINEYPLMLGCSVRKNIIPVLGYLEKIGIPRSKLGEFINSYPQVLHASVIVELVPVVRFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSVGVNPRDIGPMVTQYPYLLGMRVGTVIKPMVDYLVSLGLLKKILARMLEKRAYILGYDLEETVKPNVDCLISFGVRRECLASVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVMEKMPQVVSLHQNVIMKPVEFLIGRGIPASDVASMVIKCPQLVAVRVELMKISYYFFKSEMGRPMNELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGNYIETESVGPSFNMGGKLDLPGNAIVSDDEEESDDEVLYRRTVSL* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1043 506 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 270 301 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 306 338 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 343 373 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 234 265 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 198 229 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 378 409 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 SMART mt_12 162 193 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 Gene3D Transcription termination factor 3, mitochondrial 78 176 IPR038538 -
Lan6g1043 506 Gene3D Transcription termination factor 3, mitochondrial 250 466 IPR038538 -
Lan6g1043 506 PANTHER EXPRESSED PROTEIN 49 489 - -
Lan6g1043 506 PANTHER CGI-12 PROTEIN-RELATED 49 489 IPR003690 GO:0003690|GO:0006355
Lan6g1043 506 Pfam mTERF 148 456 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1043 Lan-Chr6 9965656 9967483 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lan6g1043 mTERF 8.8e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1043 K15032 - gmx:100809590 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1043 6 9965656 9967483 Lan10g0449 10 3244119 3246466 PCT
Lan6g1043 6 9965656 9967483 Lan3g0351 3 2565609 2568100 PCT