Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1030 ATGAGGTTTAAATCACACAAAACAATGCCGCATGAAGAGTGCAGAAAGGGAACAACAAGGGTGGAATATAGCAGCCAAGAAGAGAAACTAAGCAAAGAGAATTTGTTGCTGATGGGTCTTAGTTTAAAGATGCAGATCCATCAACACCCTGTGGCTTTGAGGATTCAAGAGCAAAGTGGGAATAAAAGGAAGTACACTTTCATTCAGGCACAGAGAGCTTGGCTTCCAAAGTTTCTGCTTTTTTGGATCATGCTTATGGCTATAATCAGTTGGTGCATTTATAGTAACATGGATGCTGATACCAAAGTCAGAAGGAGAGAAGTTCTTGGTAGTTTGTGTGATCAAAGAGCTAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCACGCACTTGCCATTCTTGTTTCAACTTTCCATTACTACAGAAGCCCTTCAGCCATTGATCAGGAAACCTTCGCGGAGTATACAGCCAGGACATCATTTGAAAGGCCATTACTCAGTGGGGTGGCCTATGCACAGAGAGTGGCTAACTCGGAGAGAGAAAGGTTTGAGAAGCAGCATGGATGGGTTATAAAGACAATGGAAAGAGTTCCTTCACCGGTCAGAGATGAGTATGCGCCGGTGATATTTGCACAAGAAACTATCTCATACCTTGAATCTCTTGATATGATGTCTGGGGAGGAGGACCGCGAAAACATTTTGAGGGCTAGGGCCACGGGGAAAGCTGTTCTGACTAGCCCCTTCAGGCTTCTAGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTACAAATCTAAGCTCCCTCCGAAGCCAACAGTGGAAGAGCGCATTAAAGCAGCAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTCGAGAATTTACTTGGTCAACTAGCTGGAAACCAAGCAATCATGGTACATGTATATGATGTCACGAACTCAACTAACCCCCTAATCATGTACGGCAACCAATATGAAGACGGCGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACCGGAAACATCTGATGATATGTAGGTATCACCAGAAGGCGCCAACGAATTGGATAGCACTTACCACAGCATCCCTATTCTTTACTATTCTTTTATTAGTAGGTTACATTTTATATGGTGCTGGAAATCATATTGTCAAAGTAGAAGATGATTTCCATGAGATGCAGGAATTAAAAGTCCGAGCAGAAGCAGCGGATGTTGCCAAGTCACAGTTTCTTGCTACTGTCTCTCATGAAATCAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTAGATACAGAATTGAGTTCTACCCAACGAGATTATGCTCAAACTGCTCAAGCGTGTGGGAAGGCTCTGATAGCACTAATTAATGAAGTACTTGACAGAGCAAAGATTGAAGCTGGCAAGTTAGAGCTTGAAGCAGTTCCATTTGACCTTCGTTCCATACTTGATGATGTCCTTTCACTTTTTTCGGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTCTCTGATAAAGTACCACATATTGTTATGGGAGATCCAGGGAGATTCAGACAAATAATAACAAATCTCGTTGGCAACTCTGTTAAATTCACTGAACAAGGACATATATTCGTTAAAGTACATCTTGCCGAAAATCGAAACTCCACAATGAATGGAAAATCTGAGATGTTTCTGAATGGAGGACCAGATGAAGTTTTACATACTTCCTTTGGTCATCATTCCAAAACCTTAAGTGGACGTGAAGCTGCAGATGAACGGAATAGCTGGGATAATTTCAAGCATCTTATTGCTGATGAAGAATTTTTCTTTGATGCTTCTATTAAAAACATGGCCTCAAGCGAATCTTATGAGCAAATCACCTTGATGGTCTGTGTTGAGGACACTGGGATTGGAATTCCTTTCTCAGCACAAGATAGTATTTTCATGCCCTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGCGGTACTGGCATTGGCTTAAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTAACATAAACTTCATAAGCCGACCACAGGTTGGAAGCACATTTTCATTTACTGCAGATTTTCGAACGTTTAAGAAAAATCCTGCAACTGATGTGAAGAAACATAATTTGGAGGATCTGCCTTATAGTTTTAGAGGGCTTAAAGCCATAGTGGTTGATGGAAAACCTGTTAGAGCTGCTGTGACTAGATACCATTTGAAGAGACTAGGGATACAAGCAAAAGTTGCAAATAACATCAACAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCAGGATTATTTCAACCTGATATTATTATCGTCGAGAAGGATTCATGGGTTTCTGGAGAGGATGGGATATTCTTCAATGTGTGGCAACTAGACTGGAAGCAGAATTGCCATCTGTTTAAGATACCTCAAATGATCCTTCTTGCCACCAATATTAGTAATGCCGAATTCGAAAAAGCTAAAGCCGCAGGTTTCACTGATACTGTGATCATGAAGCCTCTGAGAGCTAGTATGGTGGCTGCTTGTCTTCAGCAAATTCTGGGGATGGGGAAGAAGAGGCAGCTAGGGAAAGACAACCCTAATGGTTCCACTTTTCTACGAAGCATTCTTTGCGGAAAGAAAGTCTTAGTGGTTGATGACAACGTGGTAAACCGGAGGGTCGCTGCCGGAGCGCTAAAAAAGTTCGGAGCTGATGTGAAGTGTGCAGAAAGTGGCAAAGCTGCTCTTGAAATGCTACAATTTCCTCACAGTTTTGATGCTTGCTTCATGGACATTCAAATGCCAGAAATGGATGGGTTTGAAGCAACACGGCGAATTCGGAAGATGGAGAGCAAGGCAAATGAGGAGATGAATAGTGAATGTAGTGAAGTAGGAAATGGCAGGAAAAGCGAGTTCCATATACCGATATTGGCCATGACAGCCGATGTAATCCATGCAACGTACGATGAATGCTTCAAATGTGGAATGGATGGATATGTCTCAAAGCCGTTTGAGGAAGAGAATCTGTATCAAGAAGTTGCAAGGTTTTTCAAATCCAAAAACTCAGACTAA 3126 0.4207 MRFKSHKTMPHEECRKGTTRVEYSSQEEKLSKENLLLMGLSLKMQIHQHPVALRIQEQSGNKRKYTFIQAQRAWLPKFLLFWIMLMAIISWCIYSNMDADTKVRRREVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRSPSAIDQETFAEYTARTSFERPLLSGVAYAQRVANSERERFEKQHGWVIKTMERVPSPVRDEYAPVIFAQETISYLESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPKPTVEERIKAAAGYVGGSFDVESLVENLLGQLAGNQAIMVHVYDVTNSTNPLIMYGNQYEDGDVSLVHESKLDFGDPYRKHLMICRYHQKAPTNWIALTTASLFFTILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLDTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPHIVMGDPGRFRQIITNLVGNSVKFTEQGHIFVKVHLAENRNSTMNGKSEMFLNGGPDEVLHTSFGHHSKTLSGREAADERNSWDNFKHLIADEEFFFDASIKNMASSESYEQITLMVCVEDTGIGIPFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGNINFISRPQVGSTFSFTADFRTFKKNPATDVKKHNLEDLPYSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVANNINKAVSLCGKNGSLTSGLFQPDIIIVEKDSWVSGEDGIFFNVWQLDWKQNCHLFKIPQMILLATNISNAEFEKAKAAGFTDTVIMKPLRASMVAACLQQILGMGKKRQLGKDNPNGSTFLRSILCGKKVLVVDDNVVNRRVAAGALKKFGADVKCAESGKAALEMLQFPHSFDACFMDIQMPEMDGFEATRRIRKMESKANEEMNSECSEVGNGRKSEFHIPILAMTADVIHATYDECFKCGMDGYVSKPFEEENLYQEVARFFKSKNSD* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1030 1041 Gene3D - 393 482 - -
Lan6g1030 1041 CDD HATPase_EvgS-ArcB-TorS-like 536 714 - -
Lan6g1030 1041 SMART CHASE_2 146 331 IPR006189 -
Lan6g1030 1041 SMART HKATPase_4 531 716 IPR003594 -
Lan6g1030 1041 ProSiteProfiles CHASE domain profile. 146 358 IPR006189 -
Lan6g1030 1041 CDD REC_hyHK_CKI1_RcsC-like 910 1031 - -
Lan6g1030 1041 Gene3D CHASE domain 150 365 IPR042240 -
Lan6g1030 1041 SMART HisKA_10 419 484 IPR003661 GO:0000155|GO:0007165
Lan6g1030 1041 ProSiteProfiles Response regulatory domain profile. 899 1035 IPR001789 GO:0000160
Lan6g1030 1041 ProSiteProfiles Response regulatory domain profile. 741 872 IPR001789 GO:0000160
Lan6g1030 1041 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 531 715 IPR003594 -
Lan6g1030 1041 Pfam His Kinase A (phospho-acceptor) domain 419 484 IPR003661 GO:0000155|GO:0007165
Lan6g1030 1041 SMART REC_2 898 1031 IPR001789 GO:0000160
Lan6g1030 1041 SUPERFAMILY CheY-like 897 1035 IPR011006 -
Lan6g1030 1041 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g1030 1041 PANTHER HISTIDINE KINASE 4 60 1038 - -
Lan6g1030 1041 Gene3D - 893 1040 - -
Lan6g1030 1041 Gene3D - 735 876 - -
Lan6g1030 1041 CDD HisKA 419 480 IPR003661 GO:0000155|GO:0007165
Lan6g1030 1041 Coils Coil 469 489 - -
Lan6g1030 1041 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 473 711 IPR036890 -
Lan6g1030 1041 Gene3D - 97 149 - -
Lan6g1030 1041 PANTHER TWO-COMPONENT HISTIDINE KINASE 60 1038 - -
Lan6g1030 1041 Pfam Response regulator receiver domain 900 1031 IPR001789 GO:0000160
Lan6g1030 1041 Gene3D - 483 719 IPR036890 -
Lan6g1030 1041 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 405 485 IPR036097 GO:0000155|GO:0007165
Lan6g1030 1041 PRINTS Bacterial sensor protein C-terminal signature 641 655 IPR004358 GO:0016310|GO:0016772
Lan6g1030 1041 PRINTS Bacterial sensor protein C-terminal signature 659 669 IPR004358 GO:0016310|GO:0016772
Lan6g1030 1041 PRINTS Bacterial sensor protein C-terminal signature 676 694 IPR004358 GO:0016310|GO:0016772
Lan6g1030 1041 PRINTS Bacterial sensor protein C-terminal signature 700 713 IPR004358 GO:0016310|GO:0016772
Lan6g1030 1041 SUPERFAMILY CheY-like 736 873 IPR011006 -
Lan6g1030 1041 Pfam CHASE domain 149 329 IPR006189 -
Lan6g1030 1041 ProSiteProfiles Histidine kinase domain profile. 426 716 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1030 Lan-Chr6 9820521 9827410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1030 49 1036 Histidine Kinase Gene Family AT2G01830 69.461 0.0 1380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan6g1030 HATPase_c 9.6e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1030 K14489 - gmx:100818481 1692.94