Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1021 ATGGATATTGAGGAGGAGATCCGTTCTTTACAGCTTGACTCAGCAGCAGAAGAAAATAATGGCATTGTAAACCTGGAGGATGGAAAGCCAGAAGTTGGTAAATCTGATAAGAAGGATGAAGGTGATAAGATTGACGAAGTTCCAAAGCAGGAGGTTCAACCACAACCTGTTCAGGCTGAAGAGCCAAAAGCGAAAGATAAGGAAATTCCTGCTGTGCAAGATGAAAAAGATGATCTGCAGATGAAGAAAAGACACGTAAATGTTGTATTCATTGGTCATGTTGATGCTGGTAAGTCTACAACTGGAGGTCAGATACTTTTCCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATATGAGAAAGAAGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAACGAAGAGGAGAGGGTAAAGGGGAAAACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGAAAACAAGGTTCACAATTTTGGATGCCCCTGGTCACAAAAGCTATGTTCCTAACATGATCAGCGGTGCATCACAAGCTGATATCGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAATTTGAAACTGGATATGAGAAAGGCGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGTTGGGTGTGGCCAAGCTGCTTGTTGTTGTTAATAAAATGGACGAGCCTACAGTGCAGTGGTCAAAAGAAAGGTATGATGAAATTGAGTCAAAGATGCTTCCATTTCTGAAGCAATCAGGATACAATGTGAAGAAAGATGTCATATTTTTACCAATATCTGGATTGAATGGTGCAAACCTACAAACGAGAATGGATAAAAGCATTTGCCCATGGTGGGGTGGTCCTTGCTTATTTGAAGCCCTCGATTCTGTTGAACTTCCAACACGAGATCCCAAAGCTGCTTTCAGGATGCCTATAATGGACAAGTTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTGGAATCGGGTACTGTACGTGAAGGGGATTCTCTGTTGGTGATGCCAAATAAGCATCACGTAAAAGTTGTTGCTATATTTATTGACGAAGATCGGGTTAAATGTGCTGGACCTGGAGAAAACTTAAGGATTAGATTATCTGGTGTTGAAGAAGAAGACATATTGTCTGGGTTTGTCCTGTCTTCTGTTGAAAGCCCAATACCAGCTGTTACCGAGTTTGTTGCCCAGCTGCAGATCCTTGAATTGGTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTATTCTGCACATCCACTCTGTAGTTGAAGAATGTGAGATTGTTGAGCTTTTACATCAAATTGATCCAAGGACAAGGAAACCTATAAAAAAGAAAGTTCTCTTTGTGAAGAGTGGTGCTGGTGTCGTGTGCCGTGTTCAGGTTAGCAACACAATATGCATTGAGACGTTCTCTAGTTTTCCACAACTCGGGAGGTTTACTCTTCGCACTGAAGGGAAAACTATTGCAGTGGGAATAGTTACTGGTCTGTGA 1530 0.419 MDIEEEIRSLQLDSAAEENNGIVNLEDGKPEVGKSDKKDEGDKIDEVPKQEVQPQPVQAEEPKAKDKEIPAVQDEKDDLQMKKRHVNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETEKTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYEKGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERYDEIESKMLPFLKQSGYNVKKDVIFLPISGLNGANLQTRMDKSICPWWGGPCLFEALDSVELPTRDPKAAFRMPIMDKFKDMGTVVMGKVESGTVREGDSLLVMPNKHHVKVVAIFIDEDRVKCAGPGENLRIRLSGVEEEDILSGFVLSSVESPIPAVTEFVAQLQILELVDNAIFTAGYKAILHIHSVVEECEIVELLHQIDPRTRKPIKKKVLFVKSGAGVVCRVQVSNTICIETFSSFPQLGRFTLRTEGKTIAVGIVTGL* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1021 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 318 IPR027417 -
Lan6g1021 509 SUPERFAMILY Translation proteins 306 399 IPR009000 -
Lan6g1021 509 MobiDBLite consensus disorder prediction 1 69 - -
Lan6g1021 509 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 312 IPR000795 GO:0003924|GO:0005525
Lan6g1021 509 CDD eRF3_C_III 401 509 - -
Lan6g1021 509 Gene3D Translation factors 402 509 - -
Lan6g1021 509 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Lan6g1021 509 PRINTS GTP-binding elongation factor signature 166 176 IPR000795 GO:0003924|GO:0005525
Lan6g1021 509 PRINTS GTP-binding elongation factor signature 182 193 IPR000795 GO:0003924|GO:0005525
Lan6g1021 509 PRINTS GTP-binding elongation factor signature 226 235 IPR000795 GO:0003924|GO:0005525
Lan6g1021 509 PANTHER BNAA06G12300D PROTEIN 45 504 - -
Lan6g1021 509 Pfam Elongation factor Tu C-terminal domain 400 508 IPR004160 -
Lan6g1021 509 CDD eRF3_II 315 395 - -
Lan6g1021 509 Gene3D - 64 307 IPR027417 -
Lan6g1021 509 Gene3D Translation factors 312 397 - -
Lan6g1021 509 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 403 508 IPR009001 -
Lan6g1021 509 MobiDBLite consensus disorder prediction 29 49 - -
Lan6g1021 509 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 139 154 IPR031157 -
Lan6g1021 509 PANTHER TRANSLATION FACTOR 45 504 - -
Lan6g1021 509 Pfam Elongation factor Tu GTP binding domain 83 285 IPR000795 GO:0003924|GO:0005525
Lan6g1021 509 Pfam Elongation factor Tu domain 2 327 393 IPR004161 GO:0005525
Lan6g1021 509 CDD EF1_alpha 87 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1021 Lan-Chr6 9734833 9747081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1021 83 506 Eukaryotic Initiation Factors Gene Family AT5G60390 37.705 3.93e-97 299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0882 17 11366319 11374637 Lan6g1021 6 9734833 9747081 LSH