LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g1013	ATGGGCGGTGGGGGAACACTCGTTGAATGGATTCGTCGCTTCTTTAATCGACAACAACGTTCTTCTTCTTCTTCTTCTTCGGCTACTACTACTACTAACTCTCGTTCCGATGAATACGTTTCCAACAAAAACAACAATGCCATTTTAGTCAAAGATTTGCGTTCTCAATTAGCCTCTATTCCTAATCACGATACTGATCTTACCCCTGAGGAAGACTCTGATCACTCTGCTTTGAAACATATCAAAGTACCTACGGCTACCCTCTTTGTTCCTCATGCTTCTTCCATGGATTCTCACAAAAAGGGTGCACCAGAAGCAGAGTTTTTTACTGAGTATGGAGAGGCAAGTCAATATGAGATCCTAGAAGTCGTTGGAAAAGGAAGTTATGGTGTTGTGGGTTCTGCCGTTGACATTCATACTGGTGAAAAGGTTGCAATCAAGAAAATTAATGATGTTTTTGAACATGTATCAGATGCCACACGGATCCTAAGAGAAATTAAACTCCTTCGGTTGCTCAGACATCCGGATATTGTAGAAATTAAGCATATCATGCTTCCTCCTTCACGGAGAGAGTTCAGGGATATCTATGTTGTGTTTGAGTTGATGGAATCTGACCTTCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAGCACCACCAATTTTTCTTGTACCAACTTCTTCGGGGCTTGAAATATATACATACAGCAAATGTGTTTCATCGTGATTTGAAGCCAAAAAATATTCTTGTTAATGCTGATTGCAAACTAAAGATATGTGATTTTGGGCTTGCTCGGGTTTCATTTAATGATGCTCCGTCAGCTATATTCTGGACTGACTATGTCGCAACTCGGTGGTACCGTGCGCCCGAACTATGTGGTTCTTTTTTCTCAAAATATACCCCCGCAGTTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCATTGGAAAGCCATTGTTTCGTGGGAAAAATGTGGTGCATCAGTTGGATCTCATGACTGATTTGCTTGGCACTCCTCCTGCTGAGTCCATTGCAAGGATTCGAAATGAGAAAGCTAAAAGGTATCTTAGTAACATGCGAAAAAAGCAACCAGTTCCATTATCTCAAAAATTTCCAAAAGCAGATCCGCTGGCTCTTTCTTTGCTGGAGCGCCTACTTGCGTTTAATCCCAAAGATCGTCCAACAGCTGAGGAGGCATTAGCTGATCCTTACTTCAATGGTCTATCGAACATTGATTGTGAACCATCCACTCAACCAATTTCAAAACTTGAGTTTGAGTTTGAGAGAAGGAGATTGACCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTGGAGTACCATCCCCAGATGCTTCAGGAATATCTTAATGGTGGAGATTTAACCAGCTTTATGTATCCAAGTGGGGTTGATCTGTTCAAGCGACAGTTTGCACATCTTGAAGAGCATTATGGCAAAGGTCAGCGAAGCTCCCCGTTGCAGAGACAGCATGCCTCCTTACCTAGAGAGCGAGTTGTTTCTTCCAAAGTTGAAAATAATCAGAACAATTGTGAAAAGCCAAGTGGATCAAATCTTCAGAGTTCCCCAGAGTCTGATGTGACGGATTCTGGAAATGCACAAAATGGATCCTCCAAGACAAACAACAGCACACATAGCCTGTTGAAGAGTTCCAGCATTAGTGGTTCAAAGTGTATAGATGTAAAGCAAAGTAAAGATTCGAAGACGGCGCCAATTACGGAGGTCAACGAAGCAGTACATGAATTGACAAAGAATCTTGCTTCTCTTCATGCTTAG	1809	0.414	MGGGGTLVEWIRRFFNRQQRSSSSSSSATTTTNSRSDEYVSNKNNNAILVKDLRSQLASIPNHDTDLTPEEDSDHSALKHIKVPTATLFVPHASSMDSHKKGAPEAEFFTEYGEASQYEILEVVGKGSYGVVGSAVDIHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFRDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILVNADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAVDIWSIGCIFAEMLIGKPLFRGKNVVHQLDLMTDLLGTPPAESIARIRNEKAKRYLSNMRKKQPVPLSQKFPKADPLALSLLERLLAFNPKDRPTAEEALADPYFNGLSNIDCEPSTQPISKLEFEFERRRLTKDDVRELIYREILEYHPQMLQEYLNGGDLTSFMYPSGVDLFKRQFAHLEEHYGKGQRSSPLQRQHASLPRERVVSSKVENNQNNCEKPSGSNLQSSPESDVTDSGNAQNGSSKTNNSTHSLLKSSSISGSKCIDVKQSKDSKTAPITEVNEAVHELTKNLASLHA*	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g1013	602	CDD	STKc_TDY_MAPK	117	454	-	-
	Lan6g1013	602	Coils	Coil	583	602	-	-
	Lan6g1013	602	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	82	535	-	-
	Lan6g1013	602	SMART	serkin_6	118	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan6g1013	602	MobiDBLite	consensus disorder prediction	511	561	-	-
	Lan6g1013	602	MobiDBLite	consensus disorder prediction	488	561	-	-
	Lan6g1013	602	MobiDBLite	consensus disorder prediction	19	41	-	-
	Lan6g1013	602	Pfam	Protein kinase domain	118	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan6g1013	602	Gene3D	Phosphorylase Kinase; domain 1	134	455	-	-
	Lan6g1013	602	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	82	535	-	-
	Lan6g1013	602	ProSitePatterns	Protein kinases ATP-binding region signature.	124	148	IPR017441	GO:0005524
	Lan6g1013	602	ProSitePatterns	MAP kinase signature.	153	256	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Lan6g1013	602	Gene3D	Transferase(Phosphotransferase) domain 1	204	432	-	-
	Lan6g1013	602	ProSiteProfiles	Protein kinase domain profile.	118	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan6g1013	602	SUPERFAMILY	Protein kinase-like (PK-like)	114	413	IPR011009	-
	Lan6g1013	602	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	240	252	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g1013	Lan-Chr6	9661903	9667473	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g1013	1	601	MAP Kinase Gene Family	AT1G73670	68.301	0.0	816

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Lan6g1013		Pkinase	5e-68	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g1013	-		-	gmx:100780831	904.82