Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1000 ATGTCTTGTTGTGCCATATGGAATGTTCATACAAAAGGGAGAGGGAGAGGGATAAAAGAAATGGGAGGGAAAATTCTCATGGAAAATATCATCGGACTTCTTAGGATTCGAATCAAGCGTGGAATCAACCTTGTCGTTCGGGATGTCAATAAAAGCGATCCCTATGTTGTTGTTAGAATGGGCAAACAGAAACTCAAGACTCGTATGATTAAAAAAAATGTTAATCCCGAGTGGAACGAAGACCTTACGCTTTCTGTTACTTATCCACTTTCTCCATTCTTACTGACCGTGTATGACCACGACACATTTAGCAAAGATGACAAAATGGGATATGCAGAATGTGACATAACACCATTTATAGAAGCATTAAAAACGAAGACTCAAGACCTCCAAAATGGTACAATAATCAGTATAATACATCCAACCAGGAATAATTGTTTGGCAGAGGATAGTTGCATTGTTTATAACGATGGCAAATTTGTCCAAGATATTGTTCTTAGATTGCAAAATGTGAAACGTGGTGAAGTTGAAATCCAATTGCAATGGATTGATCTTCCTGGTTCCAAAGGCTTATAG 576 0.3785 MSCCAIWNVHTKGRGRGIKEMGGKILMENIIGLLRIRIKRGINLVVRDVNKSDPYVVVRMGKQKLKTRMIKKNVNPEWNEDLTLSVTYPLSPFLLTVYDHDTFSKDDKMGYAECDITPFIEALKTKTQDLQNGTIISIIHPTRNNCLAEDSCIVYNDGKFVQDIVLRLQNVKRGEVEIQLQWIDLPGSKGL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1000 191 ProSiteProfiles C2 domain profile. 15 130 IPR000008 -
Lan6g1000 191 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 19 190 IPR044562 -
Lan6g1000 191 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE 19 190 - -
Lan6g1000 191 CDD C2_ArfGAP 31 174 - -
Lan6g1000 191 Gene3D C2 domain 27 189 IPR035892 -
Lan6g1000 191 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 28 183 IPR035892 -
Lan6g1000 191 SMART C2_3c 33 128 IPR000008 -
Lan6g1000 191 Pfam C2 domain 32 120 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1000 Lan-Chr6 9542069 9543492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1000 64 191 C2H2 Transcription Factor Family AT1G70790 54.615 7.28e-43 139
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0867 17 10945311 10947003 Lan6g1000 6 9542069 9543492 LSH
Lan6g1000 6 9542069 9543492 Lan3g0374 3 2793601 2796070 PCT
Lan3g0374 3 2793601 2796070 Lan6g1000 6 9542069 9543492 PCT