Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0983 ATGGCATCTTATTCTTCTCTAGAATTTTCAATCATAGGAAAAATATTCCTTAAACTCTTACTGTTGTCTTTGGTTCTCCCAATAGCCTTCTCAATAAGAACAACTTCCTCTAACAACAACATAGATTGGTTGTGCAACCAAACCCCACACCCAGAATCATGCAAGTACTACACAAGTCAAACCAAAAACTATGACGAAATCAAACAAAAATCCTTGTTTCGTGTAGTACTTGTTCAACAAGCCTTAAAGCAAGTGCTTATCATGCAAAGTGAAGCACGAGATTTTGAACAAAATTTGATGAACAAGAGTCATAAAGCTTTATATAATGATTGTTTGGAGCTCTATGAGAACACAATTTTCCATCTCAACCTTACCATTGAGTGCATGCATGGGAAGAGAAGTTGTTCACCCTTTGATGCACAAACTTGGCTCAGCACTGCTCATACAAACATCCAAACTTGTCCAACAGCGGCCTCAGAACTCAATGCTGTAGATTTCAAAGTGTCAAAGTTGAGCAACAATGTTACTGAGATGATAAGTAACAGCTTAGCCATCAACATGGATTTCCTGAAACAAAATGCAAATAATATTCACCGGACAGCAAAAGGAGGATCAAAAGTGTTTCCAAGTTGGGTTTCTAGTTCTGATAGGAAGCTATTGACGTCAAGTTCATCGATAAAAGCAGATCTTGTGGTTGCAAAAGATGGTTCGGGACAATTCACGAATATCCAAGGTGCTATTGATAAAGCAGCAAGCACACAATCAAATAAAAGATTTATTATACATGTGAAGGAAGGCACTTACGTAGAGAATATTAAAGTGGATGTGAAGAATGGAAATATCATGCTGATTGGTGATGGAACGAAACAAACCATAATAACGGGTAGCAAAAATGCTAAAGATGGCTTTAGCACCTATAATTCAGCAACTGCAGCTATAAATGGACCCCATTTTATTGCACGTGACGTTACATTTCAAAACACTGCGGGTCCTCTCAAGGAGCAAGCTGTGGCTCTCCGATCAGCTTCCGACTTTTCTGTCTTCTACCGTTGTTCCTTTGAAGCTTACCAAGACACACTCTACATTCAAGCTCAGCGTCAATTTTTCACAGAATGCGACATATATGGCACTGTAGACTTCATCTTTGGTGATGCTGCAGCTGTGTTTCAAAAATGTAACATTTATGCAAGAAAACCCATACAAGGTCAAGCAAACATGATTACAGCACAAGGCAGAAACAATGAAAATAAAAATTCAGGAATTTCAATCCAGAACTGCCAAATTAGGGCTGCACCAGACCTTGAACCCGTTGTTGGCCAAGTCAAAACCTTCTTGGGAAGGCCATGGAAAAAATATGCAAGAGTAGCGGTCATGAACAGTTTCTTAGACACCTTGGTGGACCCACAAGGTTGGTCTCCATGGGATACCACTAACTTTGCTCTTGATACATTATATTATGGAGAGTATCAGAATTCTGGACCAGGTTCATCCACAAGTAACAGAGTAAAATGGCCTACTTTTCATGTGATGAGAAGCCCCTCTGAGGTATTTCCGTTCACAATTGATGGCCTCCTTTCTGACCGTAAAACAAATGTGCCAATTAGCACTGACCTTTGA 1617 0.3958 MASYSSLEFSIIGKIFLKLLLLSLVLPIAFSIRTTSSNNNIDWLCNQTPHPESCKYYTSQTKNYDEIKQKSLFRVVLVQQALKQVLIMQSEARDFEQNLMNKSHKALYNDCLELYENTIFHLNLTIECMHGKRSCSPFDAQTWLSTAHTNIQTCPTAASELNAVDFKVSKLSNNVTEMISNSLAINMDFLKQNANNIHRTAKGGSKVFPSWVSSSDRKLLTSSSSIKADLVVAKDGSGQFTNIQGAIDKAASTQSNKRFIIHVKEGTYVENIKVDVKNGNIMLIGDGTKQTIITGSKNAKDGFSTYNSATAAINGPHFIARDVTFQNTAGPLKEQAVALRSASDFSVFYRCSFEAYQDTLYIQAQRQFFTECDIYGTVDFIFGDAAAVFQKCNIYARKPIQGQANMITAQGRNNENKNSGISIQNCQIRAAPDLEPVVGQVKTFLGRPWKKYARVAVMNSFLDTLVDPQGWSPWDTTNFALDTLYYGEYQNSGPGSSTSNRVKWPTFHVMRSPSEVFPFTIDGLLSDRKTNVPISTDL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0983 538 ProSitePatterns Pectinesterase signature 1. 255 274 IPR018040 -
Lan6g0983 538 PANTHER PECTINESTERASE 11 527 - -
Lan6g0983 538 TIGRFAM PME_inhib: pectinesterase inhibitor domain 19 186 IPR006501 GO:0004857
Lan6g0983 538 CDD PMEI-like_3 43 186 - -
Lan6g0983 538 Gene3D - 222 538 IPR012334 -
Lan6g0983 538 SMART PMEI_2 36 185 IPR006501 GO:0004857
Lan6g0983 538 SUPERFAMILY Pectin lyase-like 224 527 IPR011050 -
Lan6g0983 538 Pfam Pectinesterase 229 525 IPR000070 GO:0030599|GO:0042545
Lan6g0983 538 Coils Coil 78 98 - -
Lan6g0983 538 ProSitePatterns Pectinesterase signature 2. 374 383 IPR033131 -
Lan6g0983 538 PANTHER PECTINESTERASE 11 527 - -
Lan6g0983 538 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 39 186 IPR035513 -
Lan6g0983 538 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 189 IPR035513 -
Lan6g0983 538 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0983 Lan-Chr6 9231217 9235034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0983 32 538 Carbohydrate Esterase AT5G51490 48.170 3.45e-176 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0983 K01051 - gmx:100807908 613.994