Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0977 ATGGAAAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCTCCAATGGTAGAGCCCTTGGTGGCCATATGAAAGCTCACCTTGCCACCTTACCCCTTCCTCCAAAGCCTCAAACTTTTCATGACCCTTTTGAATCTGCTTCATTCTCATATCAATCATACTCATCACAAGATGAAGAACGAGATATTCTAGGATCGCATGAAAAGGCACCCAGTTATGGTTGGAGTGAAAATCCAAGGAAAAGTTTAAGGTATGCAGATCCTGAATTCTCTTTTAACAACAATGGTTTTGTTGTTGTTGTTCAAGATAGAGAGAATGAGACTGGGTCAAAGAAACCATTTCGTCAAAGATCCAAAAGAAACAGAAAGTCAAGCTTGAACAAGAGTTTGGAAGAAGAACCTAAGAAGTTTAAGCATAGTTTCATGGAATCGCCACCTTTGAGTTCTGTTTCTGACTTTTCCCCTGAAGACGTTGCTATGTGTCTTATGATGCTATCAAGGGATAAGTGGGAAAGTAATGTAGTAGAAGGAGATGGAGTGAAAGAAGAAGAGATGAAGTTGAAGAATAAGAAGAGAATTGGTGGGAAGAATGAGTGTGAGAATTGTGGGAAAAAGTTTCGATCTTCAAGAGCATTGGGTAGTCATAGAAGTATATGTTGTAGTGATGAAGCTGGTGGTGGAAGAGGTGACAAGATTTTTGAATGCCCATTTTGTTTCAAGGTATTTGGTTCAGGTCAAGCACTTGGTGGCCATAAGAGATCTCATCTTATGTTGCAACAATCTTTGTCATCATCAAATGCTAATAATAACAAAGAGAGTTTCATAGATCTCAACTTGCCTGCTCCTATAGAAGATGATGATCTTACAATTGTTTCTGATGTTTCTGATGCATAG 891 0.3883 MERHKCKLCSRSFSNGRALGGHMKAHLATLPLPPKPQTFHDPFESASFSYQSYSSQDEERDILGSHEKAPSYGWSENPRKSLRYADPEFSFNNNGFVVVVQDRENETGSKKPFRQRSKRNRKSSLNKSLEEEPKKFKHSFMESPPLSSVSDFSPEDVAMCLMMLSRDKWESNVVEGDGVKEEEMKLKNKKRIGGKNECENCGKKFRSSRALGSHRSICCSDEAGGGRGDKIFECPFCFKVFGSGQALGGHKRSHLMLQQSLSSSNANNNKESFIDLNLPAPIEDDDLTIVSDVSDA* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0977 296 SUPERFAMILY beta-beta-alpha zinc fingers 197 254 IPR036236 -
Lan6g0977 296 Gene3D Classic Zinc Finger 172 255 - -
Lan6g0977 296 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Lan6g0977 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 196 223 IPR013087 -
Lan6g0977 296 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 292 - -
Lan6g0977 296 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 292 IPR044303 GO:0006355
Lan6g0977 296 MobiDBLite consensus disorder prediction 123 139 - -
Lan6g0977 296 Pfam C2H2-type zinc finger 232 254 - -
Lan6g0977 296 Pfam C2H2-type zinc finger 3 28 - -
Lan6g0977 296 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Lan6g0977 296 MobiDBLite consensus disorder prediction 103 142 - -
Lan6g0977 296 SMART c2h2final6 4 26 IPR013087 -
Lan6g0977 296 SMART c2h2final6 232 254 IPR013087 -
Lan6g0977 296 SMART c2h2final6 196 216 IPR013087 -
Lan6g0977 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Lan6g0977 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 259 IPR013087 -
Lan6g0977 296 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0977 Lan-Chr6 9177208 9178619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0977 1 290 C2H2 Transcription Factor Family AT3G60580 34.675 3.83e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g0977 zf-C2H2_6 6.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0977 - - gmx:100811637 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0419 17 3116788 3118376 Lan6g0977 6 9177208 9178619 PCT
Lan6g0977 6 9177208 9178619 Lan17g0419 17 3116788 3118376 PCT