Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0970 ATGAACATGGAAGAAGCTATCCTTTTAGACACTGAAGTTCAACCAACCACTTCTTTCTCTCACACCATTATGGCCTCCACTACTTCTTCATCAACACAAGGAGCTACCAACATAGTGAAGAAAATTCAACATGAAAAATTAGGTAGTGATATTGTAAATAAGAAGAGGAAGAATAAGGTGGTGAATAGTAATAGCAAGCATCCAACGTATAGAGGAGTAAGAATGCGTCAATGGGGCAAATGGGTGTCAGAAATTAGAGAGCCAAGGAAGAAATCAAGAATTTGGCTTGGCACTTTTCCCACGGCAGATATGGCGGCTCGAGCTCATGACGTGGCGGCTCTTGCAATCAAAGGCAGCTCGGCTTACCTTAATTTCCCCGAGCTTGTGGGCGAGCTGCCCCGCCCAGCTAGTAAGTCCCCTAAGGACATACAGGCCGCAGCGGGGAAAGCAGCCATGATAAATTATCACCATGATCGAAGTAATGAAGTGGAATTAGAAAACGAGACTCACTTGAGCCAAATTAAATCATCGTCTTATCAAATGAATTCATCTTCGAATGGTGAAGATGATATGTTTTTAGACCTCCCCGATCTCTCACTCAACCTAAATCGTTGTCATGTTGATGAGTTTCATTACTCATCAGCTTGGCTTGTAACCGGAGCCGAACATCTCGACTCTGGTTTCCAAGAGCCTTTTATATGGGAGCCATACTAA 714 0.4356 MNMEEAILLDTEVQPTTSFSHTIMASTTSSSTQGATNIVKKIQHEKLGSDIVNKKRKNKVVNSNSKHPTYRGVRMRQWGKWVSEIREPRKKSRIWLGTFPTADMAARAHDVAALAIKGSSAYLNFPELVGELPRPASKSPKDIQAAAGKAAMINYHHDRSNEVELENETHLSQIKSSSYQMNSSSNGEDDMFLDLPDLSLNLNRCHVDEFHYSSAWLVTGAEHLDSGFQEPFIWEPY* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0970 237 Pfam AP2 domain 68 118 IPR001471 GO:0003700|GO:0006355
Lan6g0970 237 Gene3D AP2/ERF domain 69 128 IPR036955 GO:0003700|GO:0006355
Lan6g0970 237 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Lan6g0970 237 CDD AP2 70 128 IPR001471 GO:0003700|GO:0006355
Lan6g0970 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 234 - -
Lan6g0970 237 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Lan6g0970 237 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Lan6g0970 237 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Lan6g0970 237 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Lan6g0970 237 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 21 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0970 Lan-Chr6 9110235 9111364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0970 57 233 AP2-EREBP Transcription Factor Family AT2G44940 50.476 1.03e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0970 AP2 7.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0970 - - aip:107629817 259.225