Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0968 ATGACCCGACGATGTTCCCATTGCAGCCACAATGGTCACAACTCTCGTACATGCCCCAACCGAGGGGTGAAGCTATTTGGGGTTCGATTAACTGATGGGTCGATTCGAAAGAGTGCTAGTATGGGTAATCTTTCTCACTATGCTGGTTCATCTGTGTCTGGTGGACCCTTACTTGGCGGTGCTGGTGGTGAAACACCTGATCAACCTTCTGCTGGTGTTGTTGCTGATGGTTATGCTTCTGAGGATTTTGTTCCTGGCTCCTCTTCTAGTTCCCGTGAAAGAAAAAAGGGAGTTCCATGGACTGAGGAAGAACATAGAATGTTTTTACTTGGATTGCAGAAGCTGGGAAAGGGAGATTGGCGTGGAATTGCAAGGAACTATGTTAAAACTAGGACACCAACTCAAGTGGCCAGTCATGCTCAGAAATATTTCATCAGGCAAAGCAACATGTCTAGGCGGAAAAGGCGTTCCAGCTTGTTTGATATTGTTGCAGATGAAGCAGCTGAAGCTCCAATGGTAGAGCAAGACTTCTTGTCTGCTAATCAGTTTGAAGCTGACACAGAAGGCAATAACCCCTTGCCTGCTCCTCCTACCCTCGATGAAGAGTGTGAATCCATGGATTCCACTAACTCGAACGATGGCGAGCCTGCAGGTCCTGCACCATTAAATCCTGATATTAACTCGGTATCATCTTATCCAGTGATGTACCCGGCATATTATTCTCCTTTCTTCCCATTTCCTCTGCCCTATTGGTCAGGATACAGTCCAGCAGAGCCCGTGAAGAAGGAGGAGATGCATGAAGTACTGAAGCCGACTGCAGTACATTCTAAAAGCCCTCTCAATGTTGATGAACTTGTGGGCATGTCCAAGCTGAGTTTAGGAGAGACTATTGGTGACTCCGGCCCCTCTACTTTGAAACAAAAACTACAGGAAGAAGGACCCTCTAGACAGTCAGCTTTTCATGCAACTCCGGCAACAACCGCGTGTGGTAGTTCGAGTATGAATGGCAATGTCATCCATGCAGTTTAA 1029 0.4694 MTRRCSHCSHNGHNSRTCPNRGVKLFGVRLTDGSIRKSASMGNLSHYAGSSVSGGPLLGGAGGETPDQPSAGVVADGYASEDFVPGSSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVKTRTPTQVASHAQKYFIRQSNMSRRKRRSSLFDIVADEAAEAPMVEQDFLSANQFEADTEGNNPLPAPPTLDEECESMDSTNSNDGEPAGPAPLNPDINSVSSYPVMYPAYYSPFFPFPLPYWSGYSPAEPVKKEEMHEVLKPTAVHSKSPLNVDELVGMSKLSLGETIGDSGPSTLKQKLQEEGPSRQSAFHATPATTACGSSSMNGNVIHAV* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0968 342 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 95 147 IPR006447 GO:0003677
Lan6g0968 342 SMART sant 96 146 IPR001005 -
Lan6g0968 342 ProSiteProfiles SANT domain profile. 100 148 IPR017884 -
Lan6g0968 342 CDD SANT 99 144 IPR001005 -
Lan6g0968 342 Pfam Myb-like DNA-binding domain 99 144 IPR001005 -
Lan6g0968 342 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Lan6g0968 342 PANTHER TRANSCRIPTION FACTOR KUA1 1 338 - -
Lan6g0968 342 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Lan6g0968 342 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g0968 342 SUPERFAMILY Homeodomain-like 94 149 IPR009057 -
Lan6g0968 342 MobiDBLite consensus disorder prediction 185 224 - -
Lan6g0968 342 PANTHER BNAC01G21010D PROTEIN 1 338 - -
Lan6g0968 342 MobiDBLite consensus disorder prediction 296 327 - -
Lan6g0968 342 Gene3D - 98 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0968 Lan-Chr6 9090753 9095932 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan6g0968 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0968 - - ccaj:109807943 525.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0968 6 9090753 9095932 Lan18g0396 18 7484932 7487285 LSH
Lan6g0968 6 9090753 9095932 Lan17g0954 17 13238209 13241557 LSH