Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0963 ATGCATATAGAGGAATTGAAGGGAGGTGAGGTGGGGAAAGAAGGTGGTGAGGGAGGAAAAATTTCACGTGTTGTTGCTTCTGATGCGAAAAGGGTTTTGGTTGGAGCAGGGGCTCGTGCACTTTTTTATCCAACCTTGCTTTACAATGTTGTGAGAAATAAAGTTCAGGCTGAGTTTAGATGGTGGGATAAGGTTGATGAGTTCGTATTACTAGGTGCTGTTCCATTCCCTGTTGATGTTCCTCAACTGAAGGAACTTGGTGTCCGTGGGGTCATTACATTGAATGAGTCATACGAAACTTTGGTTCCGACTGAATTATATTATGCTCATGGTATTGACCATCTTGTGATTCCTACTAGAGACTACTGTTTTGCTCCATCATTGCGTGATATTTGCCATGCTGTGAACTTCATACATGCAAATGCATTGTCTGGACGCACTACATATGTTCACTGCAAAGCTGGACGTGGCCGCAGTACAACTATTGTTGTATGTTACCTGGTTCATCACAAACTGATGACACCTGATGCTGCATATGCATATGTGAAGTCAATTCGGCCAAGAGTGCTTCTAGCTTCCTCTCAGTGGCAAGCAGTTCAGGAATATTACTACCACCTTATGGTGAGGAGGGCTATTGGATGTGCTCCTACAGCCAATCTATTAGTAAAGGCTTTTGAGGCACAAGCAGCTCCACAAGATCTTGTAACGTTTGATGATAGTTCAGTAGTTATGGTAACAGACTCAGATCTTGAAGGATACGATCCAAGTATTCAGTCAGGAGTCAAGGCAAGTGACATATGGGAAGATTTGAGTGTTGTTTACCGTGCACGGGTTGCTGGACAGGCGGCATTGGCAAGAATTTCATGCCTTTGGCTGCGATGTGGTACTAACCAGAAGATATCTGCAGAGGAATTGAGCAGGGAAAGCAGTTGCACAATCAGAACTAATCACTTTGTTGATATACACGTGTACTGA 975 0.4369 MHIEELKGGEVGKEGGEGGKISRVVASDAKRVLVGAGARALFYPTLLYNVVRNKVQAEFRWWDKVDEFVLLGAVPFPVDVPQLKELGVRGVITLNESYETLVPTELYYAHGIDHLVIPTRDYCFAPSLRDICHAVNFIHANALSGRTTYVHCKAGRGRSTTIVVCYLVHHKLMTPDAAYAYVKSIRPRVLLASSQWQAVQEYYYHLMVRRAIGCAPTANLLVKAFEAQAAPQDLVTFDDSSVVMVTDSDLEGYDPSIQSGVKASDIWEDLSVVYRARVAGQAALARISCLWLRCGTNQKISAEELSRESSCTIRTNHFVDIHVY* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0963 324 ProSitePatterns Tyrosine specific protein phosphatases active site. 150 160 IPR016130 GO:0016311|GO:0016791
Lan6g0963 324 Gene3D Protein tyrosine phosphatase superfamily 61 211 IPR029021 -
Lan6g0963 324 CDD PTPMT1 61 203 IPR044596 GO:0004721
Lan6g0963 324 PANTHER - 1 324 - -
Lan6g0963 324 Pfam Dual specificity phosphatase, catalytic domain 81 203 IPR000340 GO:0008138|GO:0016311
Lan6g0963 324 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 54 206 IPR029021 -
Lan6g0963 324 ProSiteProfiles Dual specificity protein phosphatase domain profile. 61 208 IPR020422 GO:0006470|GO:0008138
Lan6g0963 324 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 324 - -
Lan6g0963 324 SMART dsp_5 64 205 IPR020422 GO:0006470|GO:0008138
Lan6g0963 324 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 197 IPR000387 GO:0016311|GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0963 Lan-Chr6 9055587 9059345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0963 14 306 Protein tyrosine phosphatase (PTP) family AT2G35680 61.184 2.52e-127 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0963 - - gmx:100790413 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0963 6 9055587 9059345 Lan18g0392 18 7406266 7411110 LSH