Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0960 ATGGCAAACCCAGCTGAAGTTTCTGCTTTGAACCGGATTAAACTGCATCTTCTAGGTGAACTTTCTCCGCTTGCAATTTCAACTTCAAATCAAAGTAAACCTTGGTTCGAATTTGAAGAACCAAACCCTAGTTTCTCTCGATCTGAATCCCAATCACAATCTTCTTCCACTTCTGAATCTTCTGCTTCTCTCAATCATTACTTCACTGAACCTGAACTCGAGTTCCCCCAATTTGAACTCGAGGTCAAACCCGACGTCGTTGACCTCGAAATCGAAACCCCGGAAATTGTAACTGAGGTGAAGAAACCACAATTGAGTCGTAAACCATCGCTGGTGATTTCCGTGCCGAAGAAAACCGAGTGGATCCGGTTCCAAAAACAGGAACCGGAACCGGTTCAGAAGGTTGAACCTGAGGAGAAAAAACACTACAGAGGAGTTCGACAAAGACCGTGGGGGAAATTCGCCGCTGAGATCCGAGACCCGAATAAGCGCGGTTCTAGGGTTTGGCTGGGAACATTCGAAACTGCCATAGAAGCTGCAAAAGCTTACGATAGAGCTGCGTTTAGGCTTCGTGGCTCAAAAGCGATTCTCAATTTTCCGCTTGAAGTTTGTGCTTTGGCGGAGAACGGCGACGGCGAGAGGAAGCGCCGCCGTGAAGAGAGGGAGGAGGAAGTTGAAGAAGTAAAGGCGGTGGTGAAGAAAAAGAAAACGGTGGAAACGGTAACGGAGGTGAAGGGTGTTAATGAGACTCCATTAACGCCGTCTGTTTGGACTGGGTTTTGGGATAGTGATGTTAACGGAGTATTTAACGTTCCGCCGTTGTCGCCGTTATCTCCCATTCCGGCGTTGGGTTATCCACAACTAATGATGGTGTGA 876 0.476 MANPAEVSALNRIKLHLLGELSPLAISTSNQSKPWFEFEEPNPSFSRSESQSQSSSTSESSASLNHYFTEPELEFPQFELEVKPDVVDLEIETPEIVTEVKKPQLSRKPSLVISVPKKTEWIRFQKQEPEPVQKVEPEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETAIEAAKAYDRAAFRLRGSKAILNFPLEVCALAENGDGERKRRREEREEEVEEVKAVVKKKKTVETVTEVKGVNETPLTPSVWTGFWDSDVNGVFNVPPLSPLSPIPALGYPQLMMV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0960 291 SMART rav1_2 142 206 IPR001471 GO:0003700|GO:0006355
Lan6g0960 291 Pfam AP2 domain 142 192 IPR001471 GO:0003700|GO:0006355
Lan6g0960 291 MobiDBLite consensus disorder prediction 32 65 - -
Lan6g0960 291 ProSiteProfiles AP2/ERF domain profile. 142 200 IPR001471 GO:0003700|GO:0006355
Lan6g0960 291 SUPERFAMILY DNA-binding domain 142 202 IPR016177 GO:0003677
Lan6g0960 291 CDD AP2 141 200 IPR001471 GO:0003700|GO:0006355
Lan6g0960 291 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 276 - -
Lan6g0960 291 Gene3D AP2/ERF domain 141 202 IPR036955 GO:0003700|GO:0006355
Lan6g0960 291 PRINTS Ethylene responsive element binding protein signature 143 154 IPR001471 GO:0003700|GO:0006355
Lan6g0960 291 PRINTS Ethylene responsive element binding protein signature 182 202 IPR001471 GO:0003700|GO:0006355
Lan6g0960 291 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 6 3 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0960 Lan-Chr6 9023043 9024244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0960 1 291 AP2-EREBP Transcription Factor Family AT5G47230 47.267 2.42e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0960 AP2 3.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0960 K09286 - gmx:100808173 271.552