Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0954 ATGGGTAAAGAAGGACCTTGTTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTACTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTCGCAAATTATACCCCTTTACATGCTCGGGCAGAAATTGTTAATGACGATCAAAGGGTTTCCACTGTAATGCGCTTACCATTAAGTAAGAATAAAGAAGTGAAATTGCTCAAAAGAAAGGTGGGACAAACTGATTATGCTGTTTCTGGAGGGTTTGCCCTCAATTACAATCAAGGATTTCGAAAGGTTGTAGATGAAGATACAAGCAATAGATCAAGTTCAGGGTCAGCCGTTTCTAACTCAGAGAGCTGTGCTCAATTTGGTGGTACAGATGCTAGTGATTTAACAGGTCCAGCTCAGTCAGTGGTCTGGGACTCTACGGTGCCTGCGAAAAAGAGGGCATGTGGAGGTCGTCCAAAGCCTTCTTCTGTCGAGAAGCTCACGAAAGATTTATGTACTATCCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAGGATCTTCTTTTTGAAAGTGAAACGCCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATTAGGCATCCTAGCACTGTTGCTCGTGAAGAAGAGTCTGAGGCTAGCTCTCATTCGGTTGATAATAAACAATGCCTAATGAGTGAGGCATATTCATGTTCTGGCGGTATTCCTGTGTCCAGTGATTGGAGTGCCAAGAACTTCTCATCTCAGGGAGTTGGCAAAACTATACAACATGAGGAACTTAAAAGTGACAAGTCTCAGCTTGAAAGACTACAAGTCCTCGGAAATCATGATTCGCCATTGTGCTTAATTGATTTAAATGACATAGTGAACTATGAGGAATTTACGAAAAACTTGACAAATGAAGAACAGCAGCAATTGCTGAAGTATCTTCCTGTGGCTGATACTCGTGAAGTTCCCGATAGCCTTACGATTATGTTCAATAGCTCTCAATTCAAGGAGAACTTAACTTATTTCCAGCAACTTCTCGGGGAAGGTATCTTTGATATTTCTTTGTTGGGGACAAAACCTGAAGACTGCAAGACCTTGAAAGGACTTGCATTATCTAATTTTTCAAAGTCAAAATGGGTAGAACACTATACTTTTCTCAAGAGTTGTAATGATAGAGCTGGAATATCTATTGCCATGGGCTCTCCTGGAATAGCATCCAGTAATGTGGAACATGTCAACATATTGCGTAACAGCCAAAATCACAATTTTCCAGAATTGAAGAAAACAATGAGGAGCCCAAAAAGTGTGATCATAAAGGCTGGATGTGAGGGCAAAGAAGTTGCGGAATATGGTTCTAGCTTCAGTGAAAAATGCTTGTTTGCTTTGCCTCCTGATCGTAGTTCGCACATGATGGATTCTTTAAACTTTCATTATGAGAGTTCTGATCAGGATCTGCTACTGGAGGTGCCATCTAACAACTCTTTTCCACTAGCAGAGCTCCTGCATCCTACTACAAGCTTTGGTGCTCAAGCCAGTGCCGGTAGTAGCTCAATATACTCACACGTTTCCCATCATTAG 1602 0.4201 MGKEGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEIVNDDQRVSTVMRLPLSKNKEVKLLKRKVGQTDYAVSGGFALNYNQGFRKVVDEDTSNRSSSGSAVSNSESCAQFGGTDASDLTGPAQSVVWDSTVPAKKRACGGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSILIRHPSTVAREEESEASSHSVDNKQCLMSEAYSCSGGIPVSSDWSAKNFSSQGVGKTIQHEELKSDKSQLERLQVLGNHDSPLCLIDLNDIVNYEEFTKNLTNEEQQQLLKYLPVADTREVPDSLTIMFNSSQFKENLTYFQQLLGEGIFDISLLGTKPEDCKTLKGLALSNFSKSKWVEHYTFLKSCNDRAGISIAMGSPGIASSNVEHVNILRNSQNHNFPELKKTMRSPKSVIIKAGCEGKEVAEYGSSFSEKCLFALPPDRSSHMMDSLNFHYESSDQDLLLEVPSNNSFPLAELLHPTTSFGAQASAGSSSIYSHVSHH* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0954 533 Pfam Asx homology domain 277 360 IPR028020 -
Lan6g0954 533 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Lan6g0954 533 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 288 400 IPR044867 -
Lan6g0954 533 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Lan6g0954 533 Gene3D - 279 385 IPR038108 -
Lan6g0954 533 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Lan6g0954 533 SMART GATA_3 1 60 IPR000679 GO:0006355|GO:0043565
Lan6g0954 533 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Lan6g0954 533 PANTHER OSJNBB0038F03.10 PROTEIN 1 532 IPR044589 -
Lan6g0954 533 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 1 532 - -
Lan6g0954 533 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Lan6g0954 533 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0954 Lan-Chr6 8936493 8942588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0954 1 510 C2C2-Gata Transcription Factor Family AT4G17570 52.000 6.07e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan6g0954 ASXH 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0954 - - gmx:100799745 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0954 6 8936493 8942588 Lan18g0381 18 7222358 7227635 LSH
Lan6g0954 6 8936493 8942588 Lan17g0964 17 13548925 13554293 LSH
Lan17g0405 17 2997860 3002157 Lan6g0954 6 8936493 8942588 PCT
Lan18g0381 18 7222358 7227635 Lan6g0954 6 8936493 8942588 PCT
Lan6g0954 6 8936493 8942588 Lan17g0405 17 2997860 3002157 PCT
Lan6g0954 6 8936493 8942588 Lan18g0381 18 7222358 7227635 PCT