Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0942 ATGAAGTGTTTCTTCTTCAAAGACAAATCCAAATCAGCCCCTGAGTTGCAAAACCAAGGGAACAAGAAGAAAAACCCAGAGCTAAGAGATGCTACAAATGGGTTCAATAGGATGCTGAAGATTGGAGAAGGAGGTTTTGGGAGTGTATATAAAGGTTCTATTAGGCCTCTTAATGGACAAGGTGATCCAATTGTAGTTGCTATCAAAAGGCTTAACACCCGTGGCTTTCAGGGTCATAAAGAGTGGCTTGCAGAAGTACAATTTCTCAGCATTGTTGATCACCCAAATTTGGTTAAGCTTTTGGGATACTGCTCCGTTGATGGAGAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATACCCAACGGGAGCTTGGAAGATCACCTTTTCAATAAAGGTTTTCTCCCACTGCCTTGGAAAACAAGATTGGAGATCATGCTTGGTGCTGCTCAAGGATTAGCTTATCTACACGAGGGCCTGGAGATTCAGGTGATCTACCGAGATTTTAAATCATCAAATGTTCTACTGGACATGGATTTCCACCCAAAGCTCTCAGATTTTGGTCTTGCTAGGGAAGGTCCACAAGGCGATCAGACTCATGTATCTACTGCGGTAGTTGGAACACAAGGATATGCTGCACCAGAGTATATTGAAACAGGTCATCTCAAAGTTCAGAGTGACATGTATAGTTTTGGTGTTGTACTCTATGAGATCCTCACAGGAAGGCGGTCATTGGAAAGAAACCGGCCAACAGCGGAACAAAAGCTACTAGATTGGGTTAAACAGTATCCTGCTGACAGTAGCAGATTCAGCATGATAATTGACCCGCGCCTCAGGAACCAATATTCTCATGGCGCAGCTCGCAAAATAGCCAAGTTGGCTGATAGCTGCTTAAAGAAGACTCCTGAAGATAGACCATCCATGAGTCAGATAGTTGAAACTTTGAAGCAAGCATTGCAATATTCAGACACATCAAGCAATTCTCAGAATCCTGCTGAATCTTCTCGGTCTAAAGTGGTTCGACAAGGTAAATAG 1038 0.4316 MKCFFFKDKSKSAPELQNQGNKKKNPELRDATNGFNRMLKIGEGGFGSVYKGSIRPLNGQGDPIVVAIKRLNTRGFQGHKEWLAEVQFLSIVDHPNLVKLLGYCSVDGERGIQRLLVYEFIPNGSLEDHLFNKGFLPLPWKTRLEIMLGAAQGLAYLHEGLEIQVIYRDFKSSNVLLDMDFHPKLSDFGLAREGPQGDQTHVSTAVVGTQGYAAPEYIETGHLKVQSDMYSFGVVLYEILTGRRSLERNRPTAEQKLLDWVKQYPADSSRFSMIIDPRLRNQYSHGAARKIAKLADSCLKKTPEDRPSMSQIVETLKQALQYSDTSSNSQNPAESSRSKVVRQGK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0942 345 SUPERFAMILY Protein kinase-like (PK-like) 22 316 IPR011009 -
Lan6g0942 345 MobiDBLite consensus disorder prediction 9 29 - -
Lan6g0942 345 CDD STKc_IRAK 41 318 - -
Lan6g0942 345 Pfam Protein tyrosine and serine/threonine kinase 40 316 IPR001245 GO:0004672|GO:0006468
Lan6g0942 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lan6g0942 345 PIRSF ILK 5 330 - -
Lan6g0942 345 MobiDBLite consensus disorder prediction 321 345 - -
Lan6g0942 345 PANTHER OS01G0588500 PROTEIN-RELATED 27 341 - -
Lan6g0942 345 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL20-RELATED 27 341 - -
Lan6g0942 345 Gene3D Transferase(Phosphotransferase) domain 1 121 342 - -
Lan6g0942 345 Gene3D Phosphorylase Kinase; domain 1 5 120 - -
Lan6g0942 345 ProSiteProfiles Protein kinase domain profile. 35 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g0942 345 ProSitePatterns Protein kinases ATP-binding region signature. 41 69 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0942 Lan-Chr6 8844342 8847394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0942 27 316 Glycoside Hydrolase AT3G07070 48.288 6.67e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan6g0942 PK_Tyr_Ser-Thr 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0942 - K00924 gmx:100305403 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0942 6 8844342 8847394 Lan18g0370 18 6976449 6982980 LSH
Lan6g0942 6 8844342 8847394 Lan17g0976 17 13774223 13777773 LSH
Lan17g0389 17 2912823 2915555 Lan6g0942 6 8844342 8847394 PCT
Lan18g0370 18 6976449 6982980 Lan6g0942 6 8844342 8847394 PCT
Lan6g0942 6 8844342 8847394 Lan17g0389 17 2912823 2915555 PCT
Lan6g0942 6 8844342 8847394 Lan18g0370 18 6976449 6982980 PCT