Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0932 ATGGTTTGCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCTAAGGGACTCAAGGTTCTTCTCCTTGATGGAGACATCAATTCTGCTTCTGAGATAAGAGCAAAACTTGAGGCCATGGACTATAATGTATCTACATTTTGCGATGAAAAAGAAGCCTTGTCAGCAATCTCAAGTAGACCTGAAGACTTCCACATTGCCATAGTGGAGGTGAGTACAAGCAGAAGCCTGGGGGGTTTCAAATTTCTTGAGAATGCTAAGGACTTGCCAATCATTATGACTTCAAGCAACCATTGCCTGAACATCACGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTTAGCAAACCCCTCTGTGAGGACAAGCTCAGAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGAGCAAGTGTTAAATCTGAACCTCTAAAACCTATCATAGAATCAGTAGTGTCCATGTTGGACTTAGAAAAGGACAGCAGACAAAATGAAACTATAATGTCAATTGATTCGGAGAAAGTATCCGGGTTAACTGATAATGATCCTGAGAAGTCACCTGGAAGTGATAAATATCCGGCTCCTTCAACGCCACTATTGAAACAAGGAACAAGATTACTAGATGACGGTGATTGCCAAGAGCTGATTAACTGCTCAACAGAAAAAGAAAGCAGTGAACATGATGGAGAACCTAAATCTGTCGAAACTACGTGTGGAAATTTGAGTGCTGAAAGTACATCATTACAAAGGGAATCTGAAAAGACTCGGGTTAAGGAGGAAGAGGACTTTGCCAACCGTACTAAGGGTGAGAGTGCGAATGCAGTCTCTTCACATCCACAGAATATAAAGATTCAAAGCAAGACGGACGGTAATAGAAAATCTCTCAAGAGAGTTGGTGCTCTCAGTAATTCATGTGAGACTAAAGCTAATAGGAAGAAGATGAAAGTAGACTGGACACCAGAGCTGCACAAAAAATTTGTGAAGGCATTGGAACAACTTGGCATCGATCAAGCTATTCCTTCTAGAATATTGGAACTAATGAAAGTAGAAGGCTTGACAAGGCATAATGTAGCAAGCCACCTTCAGAAATATAGAATGCATAACAGACACATCTTGCCTAAGGAAGAAGGTAGGAAATGGCTAAATCAAAGGGATCCAATGCAAAGGAGCTACTGTCTTCAAAGACCAATAATGACCTTTCCTCCATATCATTCTAATCACACCCTTTCTCCAGCTCCTACATATTCGATGTGGGGACAACCTCACTGTCAAATGCCCGGTATGCAGATTTGGAGTCCTCCTGGTTATCCGTTGTGGCAGCCTACAGAAAGTTTGCACTGGAAACCATTTCCAGGGATGCATGCAGATGCATGGGGTTGCCCAGTCTTACCACCACCACCAACTCCTTGCTTTTCCCACCCTCAACCTCAAAATATGTCTGCATTGCACAATGCTGATGCATTGGACTACAACTTTCGTATGCCACAAAGTTCCTTTGAACATTATCCGGCAGATGATATTGTTGACAAGGTTGTGAAAGAGGCACTAACCAACCCATGGCTACCCTTGCCTTTAGGCCTAAATCCTCCTTCCACAGATAGTGTGGTAACTGAGCTTACCATGCAAGGCATTTCCAGCATTCCTCCTTCCACCAAGGGTTCTAACCCCGGTTGA 1683 0.4302 MVCTANDLQEWKDFPKGLKVLLLDGDINSASEIRAKLEAMDYNVSTFCDEKEALSAISSRPEDFHIAIVEVSTSRSLGGFKFLENAKDLPIIMTSSNHCLNITMKCIALGAVEFLSKPLCEDKLRNIWQHVVHKAFNAGASVKSEPLKPIIESVVSMLDLEKDSRQNETIMSIDSEKVSGLTDNDPEKSPGSDKYPAPSTPLLKQGTRLLDDGDCQELINCSTEKESSEHDGEPKSVETTCGNLSAESTSLQRESEKTRVKEEEDFANRTKGESANAVSSHPQNIKIQSKTDGNRKSLKRVGALSNSCETKANRKKMKVDWTPELHKKFVKALEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHNRHILPKEEGRKWLNQRDPMQRSYCLQRPIMTFPPYHSNHTLSPAPTYSMWGQPHCQMPGMQIWSPPGYPLWQPTESLHWKPFPGMHADAWGCPVLPPPPTPCFSHPQPQNMSALHNADALDYNFRMPQSSFEHYPADDIVDKVVKEALTNPWLPLPLGLNPPSTDSVVTELTMQGISSIPPSTKGSNPG* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0932 560 MobiDBLite consensus disorder prediction 223 297 - -
Lan6g0932 560 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Lan6g0932 560 MobiDBLite consensus disorder prediction 252 270 - -
Lan6g0932 560 Gene3D - 18 143 - -
Lan6g0932 560 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Lan6g0932 560 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Lan6g0932 560 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 558 IPR044825 GO:0003700|GO:0045893
Lan6g0932 560 SMART REC_2 18 128 IPR001789 GO:0000160
Lan6g0932 560 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 370 IPR006447 GO:0003677
Lan6g0932 560 Gene3D - 312 374 - -
Lan6g0932 560 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 558 - -
Lan6g0932 560 MobiDBLite consensus disorder prediction 272 291 - -
Lan6g0932 560 SUPERFAMILY CheY-like 16 134 IPR011006 -
Lan6g0932 560 SUPERFAMILY Homeodomain-like 315 373 IPR009057 -
Lan6g0932 560 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Lan6g0932 560 MobiDBLite consensus disorder prediction 170 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0932 Lan-Chr6 8712044 8733097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0932 1 554 Response Regulator Gene Family AT4G18020 48.630 5.95e-147 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lan6g0932 Response_reg 1.3e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0932 - - gmx:100784905 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0380 17 2827162 2836723 Lan6g0932 6 8712044 8733097 PCT
Lan18g0942 18 14657040 14663483 Lan6g0932 6 8712044 8733097 PCT
Lan6g0311 6 2385255 2391660 Lan6g0932 6 8712044 8733097 PCT
Lan6g0932 6 8712044 8733097 Lan17g0380 17 2827162 2836723 PCT
Lan6g0932 6 8712044 8733097 Lan18g0942 18 14657040 14663483 PCT
Lan6g0932 6 8712044 8733097 Lan6g0311 6 2385255 2391660 PCT