Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0923 ATGCCTGTACCACTTGCTCCCTATCCAACACCACCAGCTCCAGCAGCAAATGGTGCACAGAGTCAACTTGTTTGTTCTGGTTGTAGAAACCTTCTACTCTATCCTGTTGGAGCAACCTCAGTGTACTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCTCAGTTAGTGTGTGGCGGCTGCCATACTCTACTCATGTATATCCGTGGAGCAACGAGTGTGCAATGCTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTAGCACATGTCAATTGTGGGAACTGCAGGATGCTACTAATGTACCAATATGGAGCAAGATCCGTAAAATGTGCAGTTTGCAATTTTGTAACATCTGTTGGGGCCTCAGGAAGCACCAATGAGCAGAAGTTCAGCACTTAA 429 0.4709 MPVPLAPYPTPPAPAANGAQSQLVCSGCRNLLLYPVGATSVYCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASGSTNEQKFST* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0923 142 PANTHER PROTEIN LOL1 1 139 - -
Lan6g0923 142 PANTHER PROTEIN LSD1 1 139 IPR040319 -
Lan6g0923 142 SUPERFAMILY Multiheme cytochromes 25 123 IPR036280 -
Lan6g0923 142 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 22 52 IPR005735 -
Lan6g0923 142 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 61 90 IPR005735 -
Lan6g0923 142 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 99 129 IPR005735 -
Lan6g0923 142 Pfam LSD1 zinc finger 102 126 IPR005735 -
Lan6g0923 142 Pfam LSD1 zinc finger 64 88 IPR005735 -
Lan6g0923 142 Pfam LSD1 zinc finger 25 49 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0923 Lan-Chr6 8616570 8619151 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Lan6g0923 zf-LSD1 3.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0923 - - cit:102618163 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0923 6 8616570 8619151 Lan17g0991 17 14189816 14192270 LSH
Lan17g0373 17 2766687 2768989 Lan6g0923 6 8616570 8619151 PCT
Lan18g0946 18 14687798 14690109 Lan6g0923 6 8616570 8619151 PCT
Lan6g0923 6 8616570 8619151 Lan17g0373 17 2766687 2768989 PCT
Lan6g0923 6 8616570 8619151 Lan18g0946 18 14687798 14690109 PCT