Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0920 ATGGATTCTCTACCACCACCACCTCCTTCATCTTCATCATCATCCATTATGGAACCTACCTCGTTCGTTTCACATCCTTTGATGAGCCCTAGTTCCACCATGCTTGCACCAGCAACTGCTCGATTCCCTTACCACCATGTTCCTCCTCCATCGTTGTCGTCGGTGATGCCTTCTGAGCCCTTCACCACCGCCTCCGTTGTCACAACCACCATCCCTTACGACGGTTCCTTAAACTCTTCCGCGTTGAACCCTTCTGGCCCCGCTAAAAAGAAGAGGGGTCGTCCTAGGAAGTACTCGCTTGATGGCAACGTGGCTCTAGGCTTGGCCCCTACTTCTTCCACCGGACACGGTGGTGATAACGGCGGAGGAAGTGGTGGTGGTGGTGGTGATTTGAGTGGCACACTGTCCACCGAAGCTCCTGTGAAGAGACCTAGGGGAAGACCTCCTGGCTCTGGAAAGAAACAGTTGGATGCTCATGGTGCTGGTGCGGTTGGATTTAAGCATCACGTGATCTTTGTCAACTCTGGCGAGGACATCACGGAAAAGGTTATGGCCTGTTCTCAGCAAGGGACTCGGATAGTTTGTGTTCTTTCTGCTCGCGGTTTAGTCACTAATGTCACCCTTCGGCAGCCACCGTTGTCTGGCAGAATTGTATCACACGAGGGTCAATTTGAGATTATATCTCTATCAAGCTCTTTTCCGCAATCTGGAAATAATGGCGAAATTAGCAGAACAAGCTATATGAATGTGGTTATGACAGGGTCTGATGGACTGCTTTTGGCTGGTGGAGTTGTTGGAGCACTAACTGCAGCATCACCTATACAGATTGTGGTGGGTAGCTTTATTCCAAACAAGAAACAATCAAGCTCCAATGTCAATGAATCTTCTAGGCCTTCTTCTTCAGCACCAACATCATCACAAATGTTAACCTTTGGTGGATCTGTGACTCAAACCATTCCTACACCTCAAGGGCCTTCATCTGAGTCCTCTGATGAAAATGATCATAGTTCCTTTAGAGGGCCTGGACTCTACAATAATGTTACTCAGCCCATTACAAATAATATGCAGATGTTCCAACACCCACTTTGGCCTGATTACAATAATCATTAG 1110 0.4802 MDSLPPPPPSSSSSSIMEPTSFVSHPLMSPSSTMLAPATARFPYHHVPPPSLSSVMPSEPFTTASVVTTTIPYDGSLNSSALNPSGPAKKKRGRPRKYSLDGNVALGLAPTSSTGHGGDNGGGSGGGGGDLSGTLSTEAPVKRPRGRPPGSGKKQLDAHGAGAVGFKHHVIFVNSGEDITEKVMACSQQGTRIVCVLSARGLVTNVTLRQPPLSGRIVSHEGQFEIISLSSSFPQSGNNGEISRTSYMNVVMTGSDGLLLAGGVVGALTAASPIQIVVGSFIPNKKQSSSNVNESSRPSSSAPTSSQMLTFGGSVTQTIPTPQGPSSESSDENDHSSFRGPGLYNNVTQPITNNMQMFQHPLWPDYNNH* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0920 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 59 338 IPR039605 GO:0003680
Lan6g0920 369 SMART AT_hook_2 142 154 IPR017956 GO:0003677
Lan6g0920 369 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Lan6g0920 369 MobiDBLite consensus disorder prediction 1 33 - -
Lan6g0920 369 MobiDBLite consensus disorder prediction 286 349 - -
Lan6g0920 369 Gene3D - 167 296 - -
Lan6g0920 369 SUPERFAMILY AF0104/ALDC/Ptd012-like 166 284 - -
Lan6g0920 369 MobiDBLite consensus disorder prediction 72 158 - -
Lan6g0920 369 MobiDBLite consensus disorder prediction 286 331 - -
Lan6g0920 369 Pfam Plants and Prokaryotes Conserved (PCC) domain 168 281 IPR005175 -
Lan6g0920 369 ProSiteProfiles PPC domain profile profile. 162 302 IPR005175 -
Lan6g0920 369 CDD DUF296 169 281 IPR005175 -
Lan6g0920 369 MobiDBLite consensus disorder prediction 14 33 - -
Lan6g0920 369 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 59 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0920 Lan-Chr6 8596219 8599116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0920 89 312 AT-hook Motif Nuclear Localized (AHL) Family AT5G46640 51.528 3.38e-53 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0920 - - var:108323770 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0371 17 2747777 2752305 Lan6g0920 6 8596219 8599116 PCT
Lan18g0948 18 14698119 14703414 Lan6g0920 6 8596219 8599116 PCT
Lan6g0303 6 2316984 2321515 Lan6g0920 6 8596219 8599116 PCT
Lan6g0920 6 8596219 8599116 Lan17g0371 17 2747777 2752305 PCT
Lan6g0920 6 8596219 8599116 Lan18g0948 18 14698119 14703414 PCT
Lan6g0920 6 8596219 8599116 Lan6g0303 6 2316984 2321515 PCT