Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0918 ATGATGCAAATTTCATCAACCAAGTACACGCCTGAATTTGGAGTGGAGGATCAAAATTTATTTCATCAATACCCAATGGATTCTTTTGCATACCACTTAGATGATCTTGATTTCAATCCTTACACTGCATCCACAGAGAGCAACAATTCCTCTCACAAGCGCTTCAACTGTGAAATCACACAAAATGATTTCCCTATTGATAGTCCTGATAATTCTTTTGTTACACCAGCAAGACCCACTAAGCAACTCAAATCTATGAGTACTACTTGGAATGTTTCTAATTCCTCTTCATCATCTAAACTCATTTCTTTTGAGCGCTCCAATGCTTCTTCTTCAGTTGCTTCTCAGCAATATTACAACCTTCATACCAAGCCTAAATTGGAGAGTACTGGGTGTAGTGAAAATTTGGATTTTGCTTATGAGGACAAAATTAATTTTCAAAATTATGATAAACAAGCAAACAAGGCTAACACTGCGACGGCTATGAGGAACACAACGCAAGCTCAAGATCACGTATTAGCAGAAAGGAAACGAAGGGAAAAGCTCAGCCAAAGGTTCATTGCTCTTTCAGCCATGGTTCCTGGACTCAAGAAGATGGACAAGGCTACTGTGTTGGGAGATGCTATAAAATATCTGAAACAACTACAAGAACGGGTGAAGATACTGGAAGAACATGCAGCTGAGAAAACAATTGAATCAGCGGTGTTTGTTAAGAGATCTATTCTCTTCGCAGATGATGATAATAGCTCCTCTTCTGATGAAAACCCTGACATGCCAATCCCTGAAATAGAAGCTAGAGTTTGTGGTAAAGAGGTACTCATCAGAGTTCACTGTGACAAACACAATGGTCGATCGGCTGCAATACTCAATGAGTTAGAAAAGTATCATCTCACTATTCAGAGTACCAGTATTTTGCCCTTTGGGAATAACACTCTTGACATAACCATTGTTGCTCAGATGAACAAGGAACACAGTGTGAAAGCAAAGGAACTCATAAAATGCTTGAGACAGTCTTTGAAGAAGTTAATTTGA 1032 0.3886 MMQISSTKYTPEFGVEDQNLFHQYPMDSFAYHLDDLDFNPYTASTESNNSSHKRFNCEITQNDFPIDSPDNSFVTPARPTKQLKSMSTTWNVSNSSSSSKLISFERSNASSSVASQQYYNLHTKPKLESTGCSENLDFAYEDKINFQNYDKQANKANTATAMRNTTQAQDHVLAERKRREKLSQRFIALSAMVPGLKKMDKATVLGDAIKYLKQLQERVKILEEHAAEKTIESAVFVKRSILFADDDNSSSSDENPDMPIPEIEARVCGKEVLIRVHCDKHNGRSAAILNELEKYHLTIQSTSILPFGNNTLDITIVAQMNKEHSVKAKELIKCLRQSLKKLI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0918 343 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 166 215 IPR011598 GO:0046983
Lan6g0918 343 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 341 - -
Lan6g0918 343 CDD bHLH_AtNAI1_like 168 240 - -
Lan6g0918 343 PANTHER BHLH TRANSCRIPTION FACTOR 1 341 - -
Lan6g0918 343 Coils Coil 205 232 - -
Lan6g0918 343 SMART finulus 172 221 IPR011598 GO:0046983
Lan6g0918 343 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 170 232 IPR036638 GO:0046983
Lan6g0918 343 Gene3D - 162 228 IPR036638 GO:0046983
Lan6g0918 343 Pfam Helix-loop-helix DNA-binding domain 169 216 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0918 Lan-Chr6 8567469 8569539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0918 2 343 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.322 2.99e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g0918 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0918 - - gmx:100798011 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0368 17 2725990 2727861 Lan6g0918 6 8567469 8569539 PCT
Lan6g0296 6 2270166 2272858 Lan6g0918 6 8567469 8569539 PCT
Lan6g0918 6 8567469 8569539 Lan17g0368 17 2725990 2727861 PCT
Lan6g0918 6 8567469 8569539 Lan6g0296 6 2270166 2272858 PCT