Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0913 ATGGGTCTGGATCATGATGCTAGTATCTCAGGTCTCCACCTTGTTCTAGGGTTAGCTTTGACTAGTAAGACACAAAAAGAAACTTTAACTCCATCACCACAATCCAACAAGGTTGTTGATGATCATCATTTTGCTGTTATTAGGGCAACATCAAAGAAACCCTACTCAGAGGATGGGCCATCTTTAACGTTGGCCCTATCTGGTGAGAATTACAATCTCATCAATCAAGTGCCTCTTGACTTGTCCACACAAACTTCACTTCTCAGCACGGTTTCATCATTCTCAAGTGGAGGGGTGAAGAGGGAGAGGGAGCTTAGTAGTGAAGAGATAGAGAGGGTTTCTTCAAGAGTTAGTGGTGATGAAGATGAAGATGCTACCAATACCAGAAAGAAACTTAGGCTTAACAAAGAACAATCTAATATGCTGGAGGAGAGCTTCAAGCAACATAGCACTCTCAACCCAAAACAAAAGCAAGGTTTAGCTAAGCAGTTAAATCTACGGCCTCGACAAGTTGAGGTTTGGTTCCAGAATCGGAGAGCCAGAACAAAGCTGAAACAGACAGAAATGGATTGCGAGTTCCTAAAGAAATGTTGTGAAACATTGACAGAAGAGAACATGAGGCTACAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAATTAGCACAACCCTTATACATGCCTATGTCTGCAACCACCATGTGCCCTTCTTGTGAGAGGCTCAGTGGTGGTGGCGCTTCCAATAAGAGGACCCCATTCTCCATGTCCATGGCTCCCAAACCTCACTTCTACAATCCATTCACCAATCCTTCAGCAGCATGTTGA 822 0.4404 MGLDHDASISGLHLVLGLALTSKTQKETLTPSPQSNKVVDDHHFAVIRATSKKPYSEDGPSLTLALSGENYNLINQVPLDLSTQTSLLSTVSSFSSGGVKRERELSSEEIERVSSRVSGDEDEDATNTRKKLRLNKEQSNMLEESFKQHSTLNPKQKQGLAKQLNLRPRQVEVWFQNRRARTKLKQTEMDCEFLKKCCETLTEENMRLQKELQELKALKLAQPLYMPMSATTMCPSCERLSGGGASNKRTPFSMSMAPKPHFYNPFTNPSAAC* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0913 273 PANTHER - 57 273 - -
Lan6g0913 273 Gene3D - 134 183 - -
Lan6g0913 273 MobiDBLite consensus disorder prediction 101 128 - -
Lan6g0913 273 MobiDBLite consensus disorder prediction 98 128 - -
Lan6g0913 273 Pfam Homeobox associated leucine zipper 185 219 IPR003106 GO:0006355|GO:0043565
Lan6g0913 273 CDD homeodomain 129 186 IPR001356 GO:0003677
Lan6g0913 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 57 273 - -
Lan6g0913 273 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Lan6g0913 273 SUPERFAMILY Homeodomain-like 120 186 IPR009057 -
Lan6g0913 273 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Lan6g0913 273 Coils Coil 184 221 - -
Lan6g0913 273 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Lan6g0913 273 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Lan6g0913 273 SMART HOX_1 127 189 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0913 Lan-Chr6 8515355 8517320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0913 1 273 Homeobox Transcription Factor Family AT4G37790 56.463 1.10e-87 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan6g0913 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0913 K09338 - gmx:100784129 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0913 6 8515355 8517320 Lan17g1001 17 14606649 14609407 LSH
Lan18g0960 18 14764695 14766314 Lan6g0913 6 8515355 8517320 PCT
Lan6g0289 6 2216273 2218042 Lan6g0913 6 8515355 8517320 PCT
Lan6g0913 6 8515355 8517320 Lan18g0960 18 14764695 14766314 PCT
Lan6g0913 6 8515355 8517320 Lan6g0289 6 2216273 2218042 PCT