Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0904 ATGGACTTGACCCCAACCACAGGCACAGATACTCAAACCCCACCACCAACCCAACCCATCAAACTTAACCCATCCAAGTCCTTATCTTTCACCAACGGCACACTCAAGCCCCATATCACCGCCGTCCCTCCGCCGTCACAACCGCCCTACATGGTGGTTTCTTACAAAGAATGTCTCAAAAACCATGCTGCCAGCATAGGAGGCCATGCACTTGATGGTTGTGGCGAATTCATGCCTTCCTCCACCACTAACCCCACCGACCCTCGCTCCCTCAAATGTGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCCGTGACCCTCAAGAACAACAACAACAACCGCCGCAACCCAATTTCCTCACTTGCTTCTACTCCACCAACCCTTCTTCAGTCACACCCACAGCCCCACCACCACAACCACCACTGCCACAACTCCCCCACCGTGCCATGAGCCAAAGCACAAGCCCAAGTCTCAGTTCTAGCCCAAGCCACAGTCATAGCCCCATGTCATCAACCCCTTCATCACCACCACCACTCTCTCACGTGCCACCTTCATATTCAGCACCCCACATGCTCTTATCACTTGGAAACAACAACAATGCTTACTCTATCGATCATCAAAACAGAAACTTTCACTCTTCCTCATTGGTGATGAAAACTGAGACTATTAACCTGAGTGGTAAGAAGAGGTACAGAACCAAATTCAGCCAGGAGCAGAAGGAGAAGATGTTTAGCTTCTCTGAGAAATTGGGTTGGAGAATGCAAAAGAGTGATGATGGATCTGTTCAAGAGTTCTGCAATGACATTGGTGTACCTAGAGGGGTCTTCAAAGTTTGGATGCACAACAACAAGAACACTCTAAGGAAGAAATCAGAAGTGGGAAATGATGGTAATACTCCTCCTCAGATTGAAAAGACTAATGCCAATGGTGATGATATTAACAACTCTTTTAACATTAATAGCAGCAGCAACAATGACATTCACAAAAATGAAGACAACTGTGTTGATGTTCATGTTTCTTTTAATGGCTTGCCATCTTAA 1041 0.4726 MDLTPTTGTDTQTPPPTQPIKLNPSKSLSFTNGTLKPHITAVPPPSQPPYMVVSYKECLKNHAASIGGHALDGCGEFMPSSTTNPTDPRSLKCAACGCHRNFHRRDPQEQQQQPPQPNFLTCFYSTNPSSVTPTAPPPQPPLPQLPHRAMSQSTSPSLSSSPSHSHSPMSSTPSSPPPLSHVPPSYSAPHMLLSLGNNNNAYSIDHQNRNFHSSSLVMKTETINLSGKKRYRTKFSQEQKEKMFSFSEKLGWRMQKSDDGSVQEFCNDIGVPRGVFKVWMHNNKNTLRKKSEVGNDGNTPPQIEKTNANGDDINNSFNINSSSNNDIHKNEDNCVDVHVSFNGLPS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0904 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 308 - -
Lan6g0904 346 Pfam ZF-HD protein dimerisation region 53 107 IPR006456 -
Lan6g0904 346 MobiDBLite consensus disorder prediction 106 185 - -
Lan6g0904 346 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 228 285 IPR006455 -
Lan6g0904 346 MobiDBLite consensus disorder prediction 292 314 - -
Lan6g0904 346 MobiDBLite consensus disorder prediction 1 24 - -
Lan6g0904 346 MobiDBLite consensus disorder prediction 131 145 - -
Lan6g0904 346 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 16 308 - -
Lan6g0904 346 MobiDBLite consensus disorder prediction 108 130 - -
Lan6g0904 346 Gene3D - 218 289 - -
Lan6g0904 346 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Lan6g0904 346 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 106 IPR006456 -
Lan6g0904 346 MobiDBLite consensus disorder prediction 146 170 - -
Lan6g0904 346 MobiDBLite consensus disorder prediction 288 314 - -
Lan6g0904 346 SUPERFAMILY Homeodomain-like 220 289 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0904 Lan-Chr6 8433423 8435004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0904 51 287 ZF-HD Transcription Factor Family AT1G69600 46.862 1.33e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lan6g0904 ZF-HD_dimer 2.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0904 - - vra:106766949 310.071