Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0903 ATGAGTGATCGTTTGGTGCTGTATGTGGACCGGTTGGTACGGCCGGTGCCGGTTGAGCCGTTGACTCAACACCCGGCTCAGCCCTCTCCTGAGCCTTCGCCGTCAGTGGATGCTGTGGCCGTGGACAGCGACGGCGAGGGTGAGGAGGAGCCGCTGTTGCAGATGGCGGAGTGTCGCATTTGTCAGGAAGAGGACAGCGCTAATAATCTAGAGTCACCATGCGGATGCAGCGGCAGCCTTAAGTATGCTCACAGAAAGTGCATCCAGCATTGGTGCAATGAAAAAGGTGACATAACTTGTGAGATATGTCATAAGCCCTATCAACCTGGTTATACTGCCCCACCACCTTGCCCACGTCCAGAAGAAACTACCATTGATATTGTTGGAGGGTGGACAATCTCTGGCACACCTTTGGACCTGCATGATCCTCGACTCTTGGCAATTGCAGAGGCAGAACGCCAATTCTTGGAAGCCGAATATGATGGATATGCTGCCTCTAATGCCAGTGGAGCTGCATTCTGCCGTTCAGCTGCTCTAATTTTGATGGCACTTTTACTCTTGAGGCATGCACTTTCTGTCACAGATGCTGATGCTGATGCTGAAGATGACCCATCCACCTTTTTCTCTCTTTTCTTGCTTCGAGCAGCTGGTTTCCTATTGCCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGTCGGCGACAGAGACAAGAGGCTGCTGCACTGGCTGCAACCCAAGTTGCTTACGTTCTACAATCCGGGCAGCGTAGGGGTCTACAATTTGCCATAGCACCAGGACCAACGGTGGTGAATACACACCAGGAACAAGTTTAG 840 0.5155 MSDRLVLYVDRLVRPVPVEPLTQHPAQPSPEPSPSVDAVAVDSDGEGEEEPLLQMAECRICQEEDSANNLESPCGCSGSLKYAHRKCIQHWCNEKGDITCEICHKPYQPGYTAPPPCPRPEETTIDIVGGWTISGTPLDLHDPRLLAIAEAERQFLEAEYDGYAASNASGAAFCRSAALILMALLLLRHALSVTDADADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAYVLQSGQRRGLQFAIAPGPTVVNTHQEQV* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0903 279 ProSiteProfiles Zinc finger RING-CH-type profile. 50 110 IPR011016 GO:0008270
Lan6g0903 279 CDD RING_CH-C4HC3_MARCH 58 104 - -
Lan6g0903 279 MobiDBLite consensus disorder prediction 19 48 - -
Lan6g0903 279 Coils Coil 146 166 - -
Lan6g0903 279 SMART ringv_2 57 104 IPR011016 GO:0008270
Lan6g0903 279 Pfam RING-variant domain 58 103 IPR011016 GO:0008270
Lan6g0903 279 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 267 IPR033275 -
Lan6g0903 279 Pfam Protein of unknown function (DUF3675) 109 229 IPR022143 -
Lan6g0903 279 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 1 267 - -
Lan6g0903 279 SUPERFAMILY RING/U-box 56 108 - -
Lan6g0903 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 113 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0903 Lan-Chr6 8419511 8423223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0903 28 107 C3H Transcription Factor Family AT2G22120 36.145 2.04e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0903 - - ahf:112734090 446.047