Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0884 ATGGAGGAGAAGAAGTTTGTGTGTAAGTATTGCAGCAAGAGTTTTCCATGTGGGAAGAGTCTAGGTGGTCACATCAGGACTCATATGACTGAAGAAAGAAATAATAAGAATGCTAATGCTGAATGTGATGATCTAAACTTGGATGGTGTGAGAATGAAGAAGAAGAGGGATTTATGGAGTGAAGCTGGTTATGTCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCCAATGCTACTTTGGAACAACAAGAAGAGGATGAGAAGTTCTGCAAAGAATGTGGAAAAGGCTTTCCATCATTGAAAGCTCTTTGTGGCCACATGGCTTGTCACTCTGAGAAACAGAAAATGGTTATGGATAATCAATCTGATACTGAGGAGAATTGTGATATTCTGAAGCATCCAAAGAGATCCAAGAGAATGAGGTTCAAAACCCTTAGCAATAATCAGACATATTCTTCTTCTGTTCCTTTGGCAAATGGTTCTTCTTCTGTGTCAGAGGTAGAGCAGGAACAGGAAGAGGTTGCAATGTGTTTGATGTTGTTGTCCAAAGATTCTAGCCATAAGGGTCCTTTTGGTTTTGTTACTGAGTCTTCTGAAAACAACTCGGTTGTTGTAGAGGCAGCAAAATCTTCATCTGTTGATATGAGGGTAGGTGCAAAAAATGGTAACAAGTTTGTCTCTAATGGTTATGATCTTGTAGAGAAGGTTTCAAACGATGAGTTTAAGTCTGAGTTTGAGGATTACAATGTTGAATCAAGGAAGATGCTGAGCATGAATAAAGGGAGAAGCAAATGCGCTTTAACTGTACTCAAGAAGAAATCAGTGATGGGGAATTTGGATTATGATAGAAATGAAGGAACTACAAGGAAGTTTGATTCTAGAAAAACAACAAACTGTGATTATCATGGTCATAGCAAAAAGACAGAAAACATGTTTGATAGTGATGAAATCTATGAGACTGGTAAAAAAGGATGGAATAATGAGAGCTTGGCTTATGATTCAATTGATGAGAGTGATGAAAACAGTTCAGACACTGATTCTTTTCCTGCTCCAAAGTATCATAGCAGTAAGGTTTTGAATGGAAAGAAGTGTAGCAAGGCCAAGAAGAAGTTGAAGTCAAAGAAAAGCAGAGAACATGAGTGTCCAATATGCTACAAGATTTTCAAGTCAGGCCAAGCCTTAGGAGGTCATAAAAGATCCCATTTTGTTGGAGGTTCTAAAGAAAACACTGTGGTAATCAACCAAGGTCCACGCCTTATTGATCTCAATCTACCAGCTCCTGTTGATGAATAA 1302 0.3848 MEEKKFVCKYCSKSFPCGKSLGGHIRTHMTEERNNKNANAECDDLNLDGVRMKKKRDLWSEAGYVLRENPKKTMRFVHSNATLEQQEEDEKFCKECGKGFPSLKALCGHMACHSEKQKMVMDNQSDTEENCDILKHPKRSKRMRFKTLSNNQTYSSSVPLANGSSSVSEVEQEQEEVAMCLMLLSKDSSHKGPFGFVTESSENNSVVVEAAKSSSVDMRVGAKNGNKFVSNGYDLVEKVSNDEFKSEFEDYNVESRKMLSMNKGRSKCALTVLKKKSVMGNLDYDRNEGTTRKFDSRKTTNCDYHGHSKKTENMFDSDEIYETGKKGWNNESLAYDSIDESDENSSDTDSFPAPKYHSSKVLNGKKCSKAKKKLKSKKSREHECPICYKIFKSGQALGGHKRSHFVGGSKENTVVINQGPRLIDLNLPAPVDE* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0884 433 MobiDBLite consensus disorder prediction 338 357 - -
Lan6g0884 433 SMART c2h2final6 6 28 IPR013087 -
Lan6g0884 433 SMART c2h2final6 382 404 IPR013087 -
Lan6g0884 433 SMART c2h2final6 91 113 IPR013087 -
Lan6g0884 433 ProSitePatterns Zinc finger C2H2 type domain signature. 384 404 IPR013087 -
Lan6g0884 433 Gene3D Classic Zinc Finger 1 61 - -
Lan6g0884 433 Coils Coil 28 48 - -
Lan6g0884 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lan6g0884 433 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 433 - -
Lan6g0884 433 Pfam C2H2-type zinc finger 382 404 - -
Lan6g0884 433 Pfam C2H2-type zinc finger 93 115 - -
Lan6g0884 433 Pfam C2H2-type zinc finger 6 30 - -
Lan6g0884 433 SUPERFAMILY beta-beta-alpha zinc fingers 4 113 IPR036236 -
Lan6g0884 433 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lan6g0884 433 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lan6g0884 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 382 404 IPR013087 -
Lan6g0884 433 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Lan6g0884 433 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0884 Lan-Chr6 8254557 8256216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0884 1 433 C2H2 Transcription Factor Family AT1G26610 36.585 2.06e-74 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g0884 zf-C2H2_6 3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0884 - - lang:109331689 600.127