Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0862 ATGTTAGGTGGCCTCTACGGTGATCTTCCTCCGCCTTCTTCCGCCGAAGAGGAGAAATCCATCAACGCCGCCAATGTCTGGTCAAGCAGCACCAAAATGGCCCCCGCCACGCTTCGTAAACCCGCAACCGTTTTCTCTCCTCCGCTAACCGTTTTAAGATCCCAATCCAAATTGAAAAACCCTAACCCTTCCAAAACAGTGATTTCAATCACACCGGTGGTATCGGTGACCGTGCCGGACGATGTGGTTCACCAACCGGCTCTGATGGGCGTTCAATCGACGGTCATTGAGGAGTATGACCCGGCGAGGCCGAACGACTACGAGGAGTATCGGCGGGAGAAGAAGAGGAAGGCGAGGGAGGCAGAGATGATGAAGGAGTTGGAGAGAAGAAGGCAAGAAGAGGAGGAGAGAGAAAAGAGGGAGAGAGAGGAAAGAGAGAGGAGTGAAAGAGATAGTAGTAATAATAAGGATGCTTCTAGGTTGAATATTTCGGGTGAGGAGGCGTGGAGGAGGCGTGCGGCGATGAGTGGTGGTGCGGCTGCAGCGGTTGGGGCAGTGCCGAGGTCGCCCTCGCCGCCGAGCAATGTGGATGGTTTTAGTATTGGAAAATCGGAGACGGGTGGATTGGGATTAGGTGCGGGTGGGCAGATGACTGCGGCTCAGAGGATGATGGCGAAGATGGGGTGGAAGGAAGGGCAAGGGCTTGGGAAACAGGAGCAAGGGATTACCACTCCTTTGATGGCGAAGAAAACGGATAGGCGAGCTGGAGTTATTGTGAATGCTAGTGATATTAGCAAGGCGGAGAAGAAAGTGGTGAAGAGTGCCAACTTCCATGGAGTGCCTACAAGGGTGCTGCTGCTTAGGAACATGGTTGGCCCTGGTGAGGTAGATGATGAGCTAGAAGAGGAGGTAGGGTCAGAATGTGCTAAGTATGGGACAGTAACTCGGGTTCTGATATTTGAGATAACAGAGGTAAATTTCCCTGTCGATGAAGCAGTAAGAATCTTTGTGCAGTTTGAGAGACCTGAAGAAACAACTAAAGCACTTGTTGATCTTGATGGTCGATACTTCGGAGGTAGAGTGGTGCGTGCCTCCTTTTATGATGAGGAGAAGTTCAACAAGAATGAGTTGGCTCCAATGCCAGGAGAAATTCCTGGCTTCTCCTGA 1167 0.515 MLGGLYGDLPPPSSAEEEKSINAANVWSSSTKMAPATLRKPATVFSPPLTVLRSQSKLKNPNPSKTVISITPVVSVTVPDDVVHQPALMGVQSTVIEEYDPARPNDYEEYRREKKRKAREAEMMKELERRRQEEEEREKREREERERSERDSSNNKDASRLNISGEEAWRRRAAMSGGAAAAVGAVPRSPSPPSNVDGFSIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMAKKTDRRAGVIVNASDISKAEKKVVKSANFHGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEVNFPVDEAVRIFVQFERPEETTKALVDLDGRYFGGRVVRASFYDEEKFNKNELAPMPGEIPGFS* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0862 388 ProSiteProfiles G-patch domain profile. 216 262 IPR000467 GO:0003676
Lan6g0862 388 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g0862 388 PANTHER SPLICING FACTOR 45 SPF45 1 379 IPR040052 GO:0045292
Lan6g0862 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 283 369 IPR000504 GO:0003723
Lan6g0862 388 MobiDBLite consensus disorder prediction 123 156 - -
Lan6g0862 388 PIRSF SPF45 3 384 IPR040052 GO:0045292
Lan6g0862 388 SUPERFAMILY RNA-binding domain, RBD 284 372 IPR035979 GO:0003676
Lan6g0862 388 Pfam G-patch domain 219 258 IPR000467 GO:0003676
Lan6g0862 388 SMART rrm2_1 284 365 IPR003954 GO:0003676
Lan6g0862 388 SMART G-patch_5 214 260 IPR000467 GO:0003676
Lan6g0862 388 Coils Coil 107 151 - -
Lan6g0862 388 CDD RRM_UHM_SPF45 281 377 IPR034653 -
Lan6g0862 388 Gene3D - 279 377 IPR012677 -
Lan6g0862 388 MobiDBLite consensus disorder prediction 123 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0862 Lan-Chr6 8037657 8042427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0862 222 257 C2H2 Transcription Factor Family AT5G26610 61.111 5.64e-07 48.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0429 18 8306169 8308479 Lan6g0862 6 8037657 8042427 LSH