Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0833 ATGGCCGTTTTACCTAGAAGCCCCTCTAGCTTGGAATTGACCATATCTATCCCAGGCTTTGGTTCTTCACCAACTTTCCTTCACTCTTCATCTGTGAAAGAGTTGGACATAAACCAAGTACCCACAGAAGAAGAAGAATGGGTGGTATCAAACATGGAAGACGAAGAAGAACACAGCAATGGAGACACTCCCCGCAAGAAACTTCGCCTCACAAAGGAACAGTCCCGTCTTCTTGAAGAAAGCTTTACACAAAACCACACTTTAAACCCAAAGCAGAAAGAGTGTTTGGCAACGCAGCTGAAGCTGCGACCAAGGCAAGTAGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGTTGAAGCAGACAGAGATGGAATGTGAGTACCTGAAGAGGTGGTTTGGGACACTGACAGAGCAGAACAGGAGGCTTCATAGAGAGGTAGAAGAACTTAGGGCCATGAAAGTGGGTCCACCAACTGTGATATCTCCTCATAGTTGTGAACCATTACCAGCATCAACACTAACCATGTGTCCACGATGTGAGCGTGTCACCACCAATGTTGCCACCACTTTGTCTTCTAAAGTAGTCACGCCTACACTTCAGTCCCATCAACCTTCTGCGGCTTGTTGA 633 0.4724 MAVLPRSPSSLELTISIPGFGSSPTFLHSSSVKELDINQVPTEEEEWVVSNMEDEEEHSNGDTPRKKLRLTKEQSRLLEESFTQNHTLNPKQKECLATQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGTLTEQNRRLHREVEELRAMKVGPPTVISPHSCEPLPASTLTMCPRCERVTTNVATTLSSKVVTPTLQSHQPSAAC* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0833 210 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Lan6g0833 210 SUPERFAMILY Homeodomain-like 53 122 IPR009057 -
Lan6g0833 210 Gene3D - 57 128 - -
Lan6g0833 210 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Lan6g0833 210 Coils Coil 134 154 - -
Lan6g0833 210 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Lan6g0833 210 CDD homeodomain 64 122 IPR001356 GO:0003677
Lan6g0833 210 PANTHER - 1 198 - -
Lan6g0833 210 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-17 1 198 - -
Lan6g0833 210 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Lan6g0833 210 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Lan6g0833 210 SMART HOX_1 63 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0833 Lan-Chr6 7657503 7660247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0833 32 188 Homeobox Transcription Factor Family AT1G70920 63.354 2.62e-61 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan6g0833 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0833 K09338 - gmx:100775341 345.895