Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0823 ATGGCCGGCGAAGTCCCCGCCGGTAACCACTCGCCGGAGGAGATTCTTTCTCTCATTCACGACATAGCCGGAATGTGCTCCGGCGATTCATCCACTGCCGACGCCATTGCCGCCGATGTCATGTTCAGGAAAGACTGCACCGATCTGGTTCGCCGGATCTCACTCCTCACCTACTTGTTCGAGGAGATTAAAGAATTGCCGAAGGTTGTTGATTCTGCTGCTACTTCTTCTACTACTACTGGTGATTCTGATTCGTGGTCCTCTGATCTGGTTCTTGCTCTTCACTCTGCCAAACGCTTGCTTTCAATAGCTAAGAACTTTCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTACCTATCAATTTCAGTGTGTGACATGGAAATTGGAAAAAGTATTAAGCAACTTACCGTATGGCAATTTGGATATCTCAGAGGAAGTCAGAGAACAGGTGGACTTGGTTAGAACACAATTGAGACGAGCCACAGATAAATATGGGTTTATGATTTCAAAAATGCCATTTCATGAATTATCCCAGCCCATGGATCAAGAGTTTGCTCAGGTTCTTGGCAAATCTGTGAACGGATTGCATAAACAGCACAGCTGTCCTGAAAAACTATCAGAATTGAACAGAATTCCTAAAAACATTGGTGGGAAAGGCTGCAGTACATTTCGGGCATTTTCTCTCTTGGAAAGATCAAGGAGCATCCCTGTTTGCACTGATGTTTCTTCATCAAATGTTACTGATCCTGAAAGTCAAGAAAAATCTGAGAGTAAAAGTCAATCCGGAGTTAAAAAACCAGAAGCAATTGTGATCCCTGAAGATTTTCTTTGCCCAATATCACTGGAACTAATGAGAGATCCTGTTATTGTGGCCACCGGGCAGACATATGAGAGATCTTACATACAGAGGTGGATAGATTGTGGAAATACAACGTGTCCAAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACTCCAAATTATGTGTTAAGGAGCCTTATTAGTCAGTGGTGTATAGAGAACAACATTGAGCAGCCAACAGGACTAACGAATGGCAAAATGAAAAAGAGCGATGGATCGTTCAGAGATGTTACAGGTGACATAGAAGCAATCGAAGCTTTGGTCCGGAAGCTCTCGAGCCGGTCAATTGAGGAGCGTAGAGCAGCTGTTACTGAAATTCGATCACTGTCCAAACGAAGCACAGACAACAGGATACTAATTGCTGAAGCTGGAGCAATTCCGGTTCTAGTCAACCTTTTAACATCAGAAGATGTATTGACACAAGACAATGCAGTTACTTCCATCCTCAACCTTTCTATATATGAAAGTAACAAGGGACTTATAATGCTCGCTGGTGCCATTCCATCCATTGTCCAAGTCCTGAGAGCAGGAACCATGGAAGCGAGGGAAAATGCAGCTGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAGATAATAATTGGTGCCTCAGGAGCTATTCCCGCATTGGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGTAACAAGGGCAGGGCCATAAGAGCAGGGATTATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCCAATCAATGGTTGATGAAGCCCTTACAATAATGTCAGTTCTTGCAAGCCACCAAGAGGCAAAGGTTGCTATAGTAAAAGCCAGCATAATACCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGTTGCCATTTTACTTGCCTTGTGCAAGAGGGACACCGACAATCTTGCTTGTTTAAGTAGGCTTGGTGCTGTCATACCTCTTTCTGACCTTGCTAGGAGTGGTACAGAGAGGGCCAAACGCAAGGCTACTTCATTATTGGAGCATCTTCATAAGTTACAGCAGATTTGA 1962 0.4373 MAGEVPAGNHSPEEILSLIHDIAGMCSGDSSTADAIAADVMFRKDCTDLVRRISLLTYLFEEIKELPKVVDSAATSSTTTGDSDSWSSDLVLALHSAKRLLSIAKNFRSNCSSDGAAKTITYQFQCVTWKLEKVLSNLPYGNLDISEEVREQVDLVRTQLRRATDKYGFMISKMPFHELSQPMDQEFAQVLGKSVNGLHKQHSCPEKLSELNRIPKNIGGKGCSTFRAFSLLERSRSIPVCTDVSSSNVTDPESQEKSESKSQSGVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLISQWCIENNIEQPTGLTNGKMKKSDGSFRDVTGDIEAIEALVRKLSSRSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYESNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSQSMVDEALTIMSVLASHQEAKVAIVKASIIPVLIDLLRTGLPRNKENAVAILLALCKRDTDNLACLSRLGAVIPLSDLARSGTERAKRKATSLLEHLHKLQQI* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0823 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 414 IPR000225 GO:0005515
Lan6g0823 653 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 18 650 - -
Lan6g0823 653 Coils Coil 146 166 - -
Lan6g0823 653 CDD RING-Ubox_PUB 278 320 IPR045210 -
Lan6g0823 653 Pfam Armadillo/beta-catenin-like repeat 404 442 IPR000225 GO:0005515
Lan6g0823 653 Pfam Armadillo/beta-catenin-like repeat 486 524 IPR000225 GO:0005515
Lan6g0823 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515
Lan6g0823 653 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Lan6g0823 653 SUPERFAMILY ARM repeat 371 647 IPR016024 -
Lan6g0823 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 538 IPR000225 GO:0005515
Lan6g0823 653 SUPERFAMILY RING/U-box 273 348 - -
Lan6g0823 653 MobiDBLite consensus disorder prediction 242 267 - -
Lan6g0823 653 Gene3D - 352 569 IPR011989 -
Lan6g0823 653 Pfam U-box domain 274 345 IPR003613 GO:0004842|GO:0016567
Lan6g0823 653 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
Lan6g0823 653 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Lan6g0823 653 PANTHER U BOX DOMAIN-CONTAINING 18 650 - -
Lan6g0823 653 SMART arm_5 567 607 IPR000225 GO:0005515
Lan6g0823 653 SMART arm_5 526 566 IPR000225 GO:0005515
Lan6g0823 653 SMART arm_5 485 525 IPR000225 GO:0005515
Lan6g0823 653 SMART arm_5 444 484 IPR000225 GO:0005515
Lan6g0823 653 SMART arm_5 403 443 IPR000225 GO:0005515
Lan6g0823 653 Gene3D - 570 649 IPR011989 -
Lan6g0823 653 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0823 Lan-Chr6 7569195 7572602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0823 1 652 U-box Gene Family AT1G23030 60.426 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0823 - - gmx:100811123 1034.25