Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0802 ATGTCTTATTCTTCACCCCGCCTCACCTCCGAACAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTTATTACCGGTTCCACCACCTCTACATCTGTTGCTACCACCTCCAATTTCATAACTCAATTGTTATCATCTCCAACATCAGCTACCGCAGGAACCACCTTTGACAATCCAATAGTTCCAACACCAAATATTGAAACTTGCCGCGAATGCAACATTGCTGGGAGCTTAGGCTGCAACTACTTCAAAGAAGAGAAAAATCAGAAGAAGTATAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCTGAGATTCGAGACCCTAGACGCGCCACACGCGTGTGGCTTGGGACATTCAAAACAGCTGAGGAAGCAGCCAGGGCTTATGATAAAGCTGCCATTGAGTTTCGCGCACGAGCGAAACTCAACTTTCCATGGATAGATGAGACAATGACAATGCAAAAAGTAGAGGAAGTGACAAAGGATGTGAATATGAATAAGGTAATGGAAGTGGAAACAATGTTTAGGAATAAAGAAAGTGAATTTTGGGATGGGATTGGAGAACCTGATTTTCAGCAGCTTATGACAATGATGGATTTTGATGGAGATTCCACTCAAGGCTTCTAA 636 0.4513 MSYSSPRLTSEQELSVIVAALTNVITGSTTSTSVATTSNFITQLLSSPTSATAGTTFDNPIVPTPNIETCRECNIAGSLGCNYFKEEKNQKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFKTAEEAARAYDKAAIEFRARAKLNFPWIDETMTMQKVEEVTKDVNMNKVMEVETMFRNKESEFWDGIGEPDFQQLMTMMDFDGDSTQGF* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0802 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF109 2 207 - -
Lan6g0802 211 SUPERFAMILY DNA-binding domain 92 149 IPR016177 GO:0003677
Lan6g0802 211 Gene3D AP2/ERF domain 91 149 IPR036955 GO:0003700|GO:0006355
Lan6g0802 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 2 207 - -
Lan6g0802 211 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Lan6g0802 211 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Lan6g0802 211 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Lan6g0802 211 ProSiteProfiles AP2/ERF domain profile. 92 148 IPR001471 GO:0003700|GO:0006355
Lan6g0802 211 SMART rav1_2 92 154 IPR001471 GO:0003700|GO:0006355
Lan6g0802 211 CDD AP2 91 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0802 Lan-Chr6 7389538 7390652 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0802 3 156 AP2-EREBP Transcription Factor Family AT4G34410 43.878 5.27e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g0802 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0802 - - gmx:100820426 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0802 6 7389538 7390652 Lan18g0478 18 9224007 9224937 LSH
Lan6g0802 6 7389538 7390652 Lan17g0726 17 6697364 6698301 LSH