Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0794 ATGGCTCAACCAACCGCAAACGGTTCGGATCTGAATCAGCAGAATCAACAGCAACAATGGATTCAACAGCAACAGTTGCAGCCGCATCAGTATCAGCAGCAATGGATGGCCATGCAATATCCAGCTACAGCTATGGCCATGATGCAGCAACAGATGATGATGTATCCTCAACATTACATGCCTTATCTTCACCACCAACAACATCAACAACAACATCATTATCAGCAGCCGCCACATCAGCAGCAGCATCACATCAAGCACCATACGCCGCCACCGCAGCAGAACAAGCAACAACTCTCTGCTGATGAGATCAAGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAGAACTACCTCCATAACTGCTTTGCTCACACCGGAGAGGTTGTGTCGGCCAAGGTCATACGGAATAAGCTGACTGGTCAGTCGGAGGGATATGGATTTGTGGAGTTTCATTCGCGAGCAACAGCTGAGAAAGTCTTGCAGAACTATAGTGGTGCTACGATGCCAAATACTGATCAACCATTTCGTTTGAATTGGGCTTCGTTCAGTGTGGGTGAAAGGAGATCTTCTGATGCTATCTCTGATCTCTCTATATTTGTGGGGGACTTGGCCATAGAGGTTACTGATGCTATCCTGCAGGAGACTTTTGCTTCTAGATATTCCTCTATTAAGGGAGCAAAAGTTGTCATTGATGCTAATACTGGCCGTTCTAAAGGTTATGGCTTTGTAAGATTTGGTGATGAAAATGAGAAGACAAAGGCAATGACCGAAATGAATGGTGTTTATTGTTCAAGTAGGCCTATGAGAGTAGGTGTTGCCACACCCAAGAAAACTTATGGCTATCAGCAACATTATTCTTCACAGACACAGGCTGTGGTGTTGGCTGGTGGACACCCTTCTAATGGTGCTGTGACTCAAGGTTCCCAGTCTGAAGGGGATTTTAACAACACAACTATATTTGTTGGTGGGCTTGATTCTGATATCGGTGATGAGGATCTTAGACAACCATTTTTGCAATTTGGCGAGGTTGTCTCTGTGAAGATTCCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTGCTGAAAGAAAGAATGCTGAGGAAGCAATTCAAGCACTGAATGGGACAGTAATTGGGAAGCAGACAGTGCGCCTTTCTTGGGGTCGCAGTCCAGGAAAGAAGCATTGGAGGAGTGATTCCAATGGAAGCTATCATGGTGGTCAGGGTTATGGAGGAGGCAATGGATATGCTGTGAGACAGAATCAGGACATAGCTAAGAACTCTGCTGCTACAGTTCAAGGATCTTCCTAA 1317 0.4556 MAQPTANGSDLNQQNQQQQWIQQQQLQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYLHHQQHQQQHHYQQPPHQQQHHIKHHTPPPQQNKQQLSADEIKTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKLTGQSEGYGFVEFHSRATAEKVLQNYSGATMPNTDQPFRLNWASFSVGERRSSDAISDLSIFVGDLAIEVTDAILQETFASRYSSIKGAKVVIDANTGRSKGYGFVRFGDENEKTKAMTEMNGVYCSSRPMRVGVATPKKTYGYQQHYSSQTQAVVLAGGHPSNGAVTQGSQSEGDFNNTTIFVGGLDSDIGDEDLRQPFLQFGEVVSVKIPVGKGCGFVQFAERKNAEEAIQALNGTVIGKQTVRLSWGRSPGKKHWRSDSNGSYHGGQGYGGGNGYAVRQNQDIAKNSAATVQGSS* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0794 438 MobiDBLite consensus disorder prediction 65 99 - -
Lan6g0794 438 Gene3D - 59 190 IPR012677 -
Lan6g0794 438 Gene3D - 301 425 IPR012677 -
Lan6g0794 438 MobiDBLite consensus disorder prediction 391 410 - -
Lan6g0794 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 278 IPR000504 GO:0003723
Lan6g0794 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 320 392 IPR000504 GO:0003723
Lan6g0794 438 CDD RRM3_NGR1_NAM8_like 319 390 - -
Lan6g0794 438 SUPERFAMILY RNA-binding domain, RBD 199 393 IPR035979 GO:0003676
Lan6g0794 438 Gene3D - 191 288 IPR012677 -
Lan6g0794 438 CDD RRM1_SECp43_like 106 186 - -
Lan6g0794 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 174 IPR000504 GO:0003723
Lan6g0794 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 270 IPR000504 GO:0003723
Lan6g0794 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 322 385 IPR000504 GO:0003723
Lan6g0794 438 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g0794 438 SUPERFAMILY RNA-binding domain, RBD 67 186 IPR035979 GO:0003676
Lan6g0794 438 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 22 437 - -
Lan6g0794 438 SMART rrm1_1 106 181 IPR000504 GO:0003723
Lan6g0794 438 SMART rrm1_1 200 274 IPR000504 GO:0003723
Lan6g0794 438 SMART rrm1_1 321 388 IPR000504 GO:0003723
Lan6g0794 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 437 - -
Lan6g0794 438 CDD RRM2_SECp43_like 198 277 - -
Lan6g0794 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0794 Lan-Chr6 7330299 7335246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0794 104 419 Eukaryotic Initiation Factors Gene Family AT2G23350 26.364 4.81e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0794 - - gmx:100798089 590.882