Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0754 ATGCAAGGGCAGAGAAGTACAATTGGTTCCCTGCCTGAAACCTTAGAATTTGATTGTGGATCAACATCTAGTAACGCTACAGTTAATCCGCCAACTTACTGGAGTAATATGCAAAATCCTGCAGAAAACCACATACCTGAATGTATACTTTCCCCTGGTGAGATTAACTCATCCTATGTGAATTATATAAACCAGGACTGGCAAAACTTGAGTGGATGGAGCTTCGGTGAGCCAAGTTCTGGTAACACACAGAATGAGGTTAACAACAATGAGCAGAAAAGAGAACTAGGATGGCCATCTTCAGTAAGTGCTAGTGCTATAGCTGGTCCAGTACTAGAAAGGCGCTCCAGACCAGCCAATGCTCTTTCTTTGGACAATGTCATTACAAGTTCTATGCCTATGAATAGCTCCAGTTCTCATTTGGTGTCCCAGAGTCTTAACTTAAATGCAAGCTTAGCAGATAGTGGCAGTGATAATAGCCATCATGTGGAACATCCTAACTTGCCCAAGTCTAGTGGACCAATGAATGAGCATATTCCACCTATTACTAGTTCGGGTTCTTTTATGCTTCCTCCTGAAAGCAACGGCTTTTTGGTTGAGGATGCTGATGGTAGGCCAGGTTGTTCTCGAGACACTCGCCATGTATCTCGTAAAAGGAAGGCTGTTGAACGAGACTTTGGACAATCTTCATATGTTGGAAGTTGTAGCTACAGTCAGAATAGAGATGGTATTGCTTGGAACACGCTTCCTACTCAGAATTATGCAGGGAGCAATTTTAGCAGATCTGCTTCAGCAGAACAGGTAAACGCAAGACTTGGCCTGAGTACGGGTAACGTTGTATCTGAAAGTGTTCCTGACACAAATGTTGCAGGAAGTTCAGAAAACTTCCTTAGAAATTGTCGTTTGAGGATAAATCCTCCAAGCCAACAAAATTCCATTTCTCCCACTGCATTCTCAAGTAACAGTATGATTAGGAATACTGGTGTTTCTTCGTGCACTTCAATGTTGCAAAGGATTCATCCTGTCGATAATTCTCTGGATTTGAGGTCAGTACCACCAGTTGATACTATGACTCCTCAAAGTCAGCCCCCTATAGTCCATGTTCCTGCTTTACCAAGGAATGCACAATCATTTAGGTGGAGTGGTGGTTCTAGCTTAACAAACAACTACTCATCAAATTCAGTTATGAGTGCAGATAGGGATAATCTACCACATGAGGATGGTAGCTCGAGAAGTATGCCTAGAAACATCTTAGAACAACCAGTGTCTGTCCCTTCAACCAATTTGAGAAATTTGTTCCAGAATCCAGCAATTAGAGCTTCAACTAGTGCAAATTTAAGTATTCCCGGAAATGTTGCTTCATCACGACCAGGGTCAAATTCAGCTATCAATCCATCATCTGCCTCTCCGTGGGTTTCTCCACCCGATCCTCAGCAGCAGTTTCCACGCAGGTTAGCTGAATATGTTCGCTGGCCCTTGTTTTCTCCTGGTTCTGCGGCTGCTGGAAGTCCAATCAACAATTATTCTTCCTTGCACGGTCCTGCTACTTCATCTGTTTTGTCATCTGGGGTGGTACACCCGAGATCATCTACATTGTTGGAGAGGCTAGGTGACAGTGAACATGCAATTCCTCCTTCATTACGATCGTCGGCTGTTGCCGGTGATGGAAGTGGTAGAATTGTATCTGAGCTCCGCAATGTGTTGGGCCTCATGCGTAGGGGTAGGAGCCTGCGACTTGAGGATGTTATGATGCTCAACCATTCAATGTTTCCTGGAATAGCTGATATTCATGACAGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGTTATTGGCTTTGGAAGAGCGCATTGGAAATGTAAGTACTGGGTTGAATGAGGAAACCATAATGAAACATTTGAAACAGAAGAAGTATTTAGTTGAAACAGGATCCCAGCATGAGGCAGAACCCTGTTGTGTTTGTCAGGAGGAGTATAAGGATGGAGATAATATGGGATCGCTGGATTGCGGTCATGGTTTCCATTACGACTGTGTAAAACAATGGCTAACACATAAGAATCTCTGCCCCATTTGTAAGACAGCAGGCTTGGCAACATGA 2112 0.4361 MQGQRSTIGSLPETLEFDCGSTSSNATVNPPTYWSNMQNPAENHIPECILSPGEINSSYVNYINQDWQNLSGWSFGEPSSGNTQNEVNNNEQKRELGWPSSVSASAIAGPVLERRSRPANALSLDNVITSSMPMNSSSSHLVSQSLNLNASLADSGSDNSHHVEHPNLPKSSGPMNEHIPPITSSGSFMLPPESNGFLVEDADGRPGCSRDTRHVSRKRKAVERDFGQSSYVGSCSYSQNRDGIAWNTLPTQNYAGSNFSRSASAEQVNARLGLSTGNVVSESVPDTNVAGSSENFLRNCRLRINPPSQQNSISPTAFSSNSMIRNTGVSSCTSMLQRIHPVDNSLDLRSVPPVDTMTPQSQPPIVHVPALPRNAQSFRWSGGSSLTNNYSSNSVMSADRDNLPHEDGSSRSMPRNILEQPVSVPSTNLRNLFQNPAIRASTSANLSIPGNVASSRPGSNSAINPSSASPWVSPPDPQQQFPRRLAEYVRWPLFSPGSAAAGSPINNYSSLHGPATSSVLSSGVVHPRSSTLLERLGDSEHAIPPSLRSSAVAGDGSGRIVSELRNVLGLMRRGRSLRLEDVMMLNHSMFPGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEETIMKHLKQKKYLVETGSQHEAEPCCVCQEEYKDGDNMGSLDCGHGFHYDCVKQWLTHKNLCPICKTAGLAT* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0754 703 MobiDBLite consensus disorder prediction 204 222 - -
Lan6g0754 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 620 700 IPR013083 -
Lan6g0754 703 SUPERFAMILY RING/U-box 645 698 - -
Lan6g0754 703 MobiDBLite consensus disorder prediction 177 191 - -
Lan6g0754 703 MobiDBLite consensus disorder prediction 152 222 - -
Lan6g0754 703 MobiDBLite consensus disorder prediction 449 469 - -
Lan6g0754 703 CDD RING-H2_TTC3 655 697 - -
Lan6g0754 703 ProSiteProfiles Zinc finger RING-type profile. 656 697 IPR001841 -
Lan6g0754 703 MobiDBLite consensus disorder prediction 449 479 - -
Lan6g0754 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 702 IPR045191 GO:0061630
Lan6g0754 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MBR2-LIKE ISOFORM X1 1 702 - -
Lan6g0754 703 MobiDBLite consensus disorder prediction 1 23 - -
Lan6g0754 703 SMART ring_2 656 696 IPR001841 -
Lan6g0754 703 MobiDBLite consensus disorder prediction 389 416 - -
Lan6g0754 703 Pfam Ring finger domain 656 697 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0754 Lan-Chr6 6880449 6887221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0754 303 703 C3H Transcription Factor Family AT2G15530 40.566 4.64e-74 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0754 - - gmx:100783014 882.863