Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0752 ATGGCGCAAATTCAGGTTCAGCAACAGAGTCCTGTACCGGTTCCTCCTTCTCAAAACGGTGTCGCTTCTGGTGCTCCGAACGCGTTCCTCGTAACGACGTCGTTGTACGTTGGGGATCTTGACTTTAATGTGAACGATTCGCAGCTCTATGATTTGTTCAACCAGGTTGGACAAGTCGTTTCGGTTCGGGTGTGTCGCGATTTAACCACACACTGTTCACTCGGTTATGGTTATGTTAATTTCAGTAACCCTCAGGATGCGGCAAGAGCATTGGATGTGCTGAATTTTACTCCACTGAATAACAAACCTATTAGGGTTATGTATTCTCATAGGGATCCTAGTATTCGCAAGAGTGGTACTGCTAATATTTTTATCAAGAATTTGGATAAGATGATTGATCACAAAGGCTTACATGATACCTTTTCTACCTTTGGACAAATTCTTTCCTGCAAAGTAGCAACTGATGCTTCTGGCCAGTCCAAAGGCTATGGTTTTGTTCAGTTCGACAGTGAAGAGGCAGCAAAAAATGCTATTGATAAGTTGAATGGCATGCTGTTGAATGATAAGCAGGTTTATGTAGGTCATTTCCTAAGGAAGCAAGATAGACACAATGCTCCCAGTAAGACAAAATTCAATAATGTCTATGTGAAAAACCTATCGGAGTCAGTGACAGATGATGACTTGAAGAAATTTTTTGGTGAATATGGGACCATTACTAGTTCTGTAGTAATGAGAGATGGTGATGGGAAATCTAAGTGTTTTGGTTTTGTCAACTTTGAAAACCCAGATGAGGCAGCTAAAGCTGTTGAGTCACTCAATGGGAAGAAGTTTGAGGACAAGGAGTGGTATGTTGGGAAAGCCCAGAAAAAATCTGAACGAGAGCAAGAGCTCAAAGGACGTTTTGAACAGAGTATAAAAGAGACTGTTGACAAGTATCATGGTGTGAATTTGTATCTCAAGAACTTGGATGATACCATCAGTGATGAAAAGCTGAAAGAACTATTCTCTGAGTTTGGTACAGTTACTTCAGGCAAGGTTATGCGAGACCCAAGTGGACTCAGCAGAGGATCAGGATTTGTTGCGTTTTCAACCCCTGATGAAGCTTCTAGAGCTCTTGCAGCGATGAATGGTAAACTGATTGCTGGCAAACCTCTATATGTTGCCCTTGCACAGAGAAAAGAAGAGCGGAGAGCAAGGTTACAGGCACAATTTTCTCAAATGAGGCCTGTTTCAGCTACTCCTGTTGCACCTCGTATGCAACTCTACCCTCCTGGTGCTCCTGGTTTAGGGCAGCAATTTTTGTATGGTCAAGGACCCCCAGCCATCATTCCCCCACAAGCTGGATTTGGTTACCAGCAGCAGCTTGTTCCTGGGATGAGACCTGGTGGTGGTCCAATGCCAAGCTTCTTTTTACCAATGGTTCAGCAGGGCCAACAAGGCCAGCGCCCAGGTGGGCGCCGAGGAGCAGGTTCTGTGCAACAACCCCAGCAGCCAGTGCCAGTGCTGCAACAGCAGATGATTCCAAGAGGACGTGTCTATCGTTACCCTCCTGGTCGCAACATGCAAGATGCCCCCCTGCAAGGAGTTGGTGGTGGAATAATACCAGTCCCTTATGATATCGGTGGTCTTCCAATCCGGGATGCTGTGGGGCAGCCAATGCCCATTCAGGCCTTGGCTACAGCCCTTGCAAATGCCCCTCCTGAACAACAGAGGACTATGCTTGGTGAAGCTTTGTACCCGCTCGTAGATCAGCTGGAACACGATGCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAGGTATTGCACCTGATTGAGTCGCCCGATGCTCTGAAGGCTAAAGTTGCTGAAGCCATGGATGTGTTGAGAAATGTTGCACAACAGCAACCTAACATACCCGCTGATCAACTAGCTTCACTCTCTCTCAATGACAATATTGTCTCTTAA 1959 0.4594 MAQIQVQQQSPVPVPPSQNGVASGAPNAFLVTTSLYVGDLDFNVNDSQLYDLFNQVGQVVSVRVCRDLTTHCSLGYGYVNFSNPQDAARALDVLNFTPLNNKPIRVMYSHRDPSIRKSGTANIFIKNLDKMIDHKGLHDTFSTFGQILSCKVATDASGQSKGYGFVQFDSEEAAKNAIDKLNGMLLNDKQVYVGHFLRKQDRHNAPSKTKFNNVYVKNLSESVTDDDLKKFFGEYGTITSSVVMRDGDGKSKCFGFVNFENPDEAAKAVESLNGKKFEDKEWYVGKAQKKSEREQELKGRFEQSIKETVDKYHGVNLYLKNLDDTISDEKLKELFSEFGTVTSGKVMRDPSGLSRGSGFVAFSTPDEASRALAAMNGKLIAGKPLYVALAQRKEERRARLQAQFSQMRPVSATPVAPRMQLYPPGAPGLGQQFLYGQGPPAIIPPQAGFGYQQQLVPGMRPGGGPMPSFFLPMVQQGQQGQRPGGRRGAGSVQQPQQPVPVLQQQMIPRGRVYRYPPGRNMQDAPLQGVGGGIIPVPYDIGGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQPNIPADQLASLSLNDNIVS* 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0752 652 CDD RRM1_I_PABPs 34 113 - -
Lan6g0752 652 Gene3D - 302 401 IPR012677 -
Lan6g0752 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 554 631 IPR002004 GO:0003723
Lan6g0752 652 CDD RRM3_I_PABPs 211 290 - -
Lan6g0752 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Lan6g0752 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 123 191 IPR000504 GO:0003723
Lan6g0752 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 282 IPR000504 GO:0003723
Lan6g0752 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 385 IPR000504 GO:0003723
Lan6g0752 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 105 IPR000504 GO:0003723
Lan6g0752 652 Pfam Poly-adenylate binding protein, unique domain 562 626 IPR002004 GO:0003723
Lan6g0752 652 MobiDBLite consensus disorder prediction 476 498 - -
Lan6g0752 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Lan6g0752 652 Gene3D - 197 301 IPR012677 -
Lan6g0752 652 Gene3D - 1 120 IPR012677 -
Lan6g0752 652 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g0752 652 SUPERFAMILY PABC (PABP) domain 496 638 IPR036053 GO:0003723
Lan6g0752 652 Gene3D - 121 195 IPR012677 -
Lan6g0752 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 34 627 IPR006515 GO:0003723
Lan6g0752 652 SUPERFAMILY RNA-binding domain, RBD 33 201 IPR035979 GO:0003676
Lan6g0752 652 PANTHER RNA BINDING PROTEIN 23 636 - -
Lan6g0752 652 SMART rrm1_1 316 388 IPR000504 GO:0003723
Lan6g0752 652 SMART rrm1_1 122 194 IPR000504 GO:0003723
Lan6g0752 652 SMART rrm1_1 34 107 IPR000504 GO:0003723
Lan6g0752 652 SMART rrm1_1 213 285 IPR000504 GO:0003723
Lan6g0752 652 Gene3D - 550 633 - -
Lan6g0752 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723
Lan6g0752 652 PANTHER POLYADENYLATE-BINDING PROTEIN 23 636 - -
Lan6g0752 652 CDD RRM4_I_PABPs 314 392 - -
Lan6g0752 652 SMART poly_2 566 629 IPR002004 GO:0003723
Lan6g0752 652 SMART rrm2_1 122 194 IPR003954 GO:0003676
Lan6g0752 652 SMART rrm2_1 34 107 IPR003954 GO:0003676
Lan6g0752 652 SMART rrm2_1 213 285 IPR003954 GO:0003676
Lan6g0752 652 SMART rrm2_1 316 388 IPR003954 GO:0003676
Lan6g0752 652 CDD RRM2_I_PABPs 119 195 IPR045305 -
Lan6g0752 652 SUPERFAMILY RNA-binding domain, RBD 212 396 IPR035979 GO:0003676
Lan6g0752 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 198 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0752 Lan-Chr6 6859710 6864970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0752 1 647 Eukaryotic Initiation Factors Gene Family AT4G34110 66.972 0.0 847
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0752 K13126 - gmx:100784442 1088.17