LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g0734	ATGCAGATGCAAATCTTTGTGAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCTGACACCATTGACAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATTCCACCAGATCAACAGAGGCTTATATTTGCTGGAAAGCAACTTGAAGATGGAAGGACTTTGGCAGATTATAACATCCAGAAGGAGTCTACTCTTCATTTGGTACTGCGTTTGAGGGGAGGAATGCAGATATTTGTGAAGACTCTGACTGGGAAGACTATTACATTGGAGGTGGAGAGTTCTGACACGATTGATAATGTGAAGGCAAAAATACAAGACAAGGAGGGGATTCCACCAGATCAACAGAGGTTGATCTTCGCTGGGAAACAGTTGGAAGATGGAAGGACTCTTGCTGACTATAACATTCAGAAGGAGTCAACTCTTCACCTTGTCTTACGTCTTCGTGGTGGCTTTTAA	468	0.4338	MQMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g0734	155	ProSitePatterns	Ubiquitin domain signature.	29	54	IPR019954	-
	Lan6g0734	155	CDD	Ubl_ubiquitin	3	78	-	-
	Lan6g0734	155	PRINTS	Ubiquitin signature	13	33	IPR019956	-
	Lan6g0734	155	PRINTS	Ubiquitin signature	34	54	IPR019956	-
	Lan6g0734	155	PRINTS	Ubiquitin signature	55	76	IPR019956	-
	Lan6g0734	155	SMART	ubq_7	79	150	IPR000626	GO:0005515
	Lan6g0734	155	SMART	ubq_7	3	74	IPR000626	GO:0005515
	Lan6g0734	155	SUPERFAMILY	Ubiquitin-like	3	78	IPR029071	-
	Lan6g0734	155	CDD	Ubl_ubiquitin	79	154	-	-
	Lan6g0734	155	ProSitePatterns	Ubiquitin domain signature.	105	130	IPR019954	-
	Lan6g0734	155	SUPERFAMILY	Ubiquitin-like	78	154	IPR029071	-
	Lan6g0734	155	ProSiteProfiles	Ubiquitin domain profile.	3	78	IPR000626	GO:0005515
	Lan6g0734	155	PANTHER	-	3	154	-	-
	Lan6g0734	155	PANTHER	UBIQUITIN	3	154	-	-
	Lan6g0734	155	ProSiteProfiles	Ubiquitin domain profile.	79	154	IPR000626	GO:0005515
	Lan6g0734	155	Gene3D	-	1	78	-	-
	Lan6g0734	155	Gene3D	-	79	155	-	-
	Lan6g0734	155	Pfam	Ubiquitin family	5	76	IPR000626	GO:0005515
	Lan6g0734	155	Pfam	Ubiquitin family	81	152	IPR000626	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g0734	Lan-Chr6	6668157	6669366	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g0734	3	79	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	98.701	1.39e-50	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g0734	-		K08770	psom:113349274	300.441