Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g0729 ATGAAGTTCAACATTGCTAACCCCACCACTGGATGCCAGAAGAAGCTGGAAATCGATGACGACCTGAAGCTCCGGGCATTTTGGGATAAGAGGATCTCACAGGAGGTACTCGGTGATGCTCTAGGCGAGGAATTTAAAGGGTATGTCTTCAAGATCACCGGAGGATGTGACAAACAAGGATTCCCAATGAAGCAGGGTGTGCTGACCCCTGGTCGTGTCCGTCTCTTGCTTCATAGAGGGACCCCATGTTTCCGTGGATATGGAAGGCGCACTGGAGAGCGCAGGAGAAAGTCTGTTCGTGGTTGTATTGTCAGCCCAGACCTCTCCGTTCTGAACTTGGTAATTGTGAAGAAGGGTGATGATGATTTACCTGGCCTGACTGACATCGAGAAGCCAAGAATGAGGGGCCCCAAGAGAGCATCCAAGATCCGCAAGCTGTTCAACTTGTCCAAGGAGGATGATGTGAGGAAGTATGTTAACACATACCGCAGAACCTTTACAACCAAAAATGGCAAAAAGGTGAGCAAAGCTCCAAAGATTCAACGACTGGTGACTCCTTTGACACTCCAAAGGAAGAGAGCAAGAATTGCTGATAAGAAGAAGAGAATTGCAAAGGCAAAATCTGATGCTGCAGAGTATCAGAAGCTCCTTGCTTCAAGGTTGAAGGAACAGAGGGAACGCAGGAGTGAGAGTTTGGCCAAGAAGAGATCCAGACTTTCCAGTGCCACCAAACCATCTGTCACAGCTTAA 750 0.4827 MKFNIANPTTGCQKKLEIDDDLKLRAFWDKRISQEVLGDALGEEFKGYVFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGDDDLPGLTDIEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSDAAEYQKLLASRLKEQRERRSESLAKKRSRLSSATKPSVTA* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g0729 249 PIRSF RPS6e 1 249 IPR014401 GO:0003735|GO:0005840|GO:0006412
Lan6g0729 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 - -
Lan6g0729 249 MobiDBLite consensus disorder prediction 220 249 - -
Lan6g0729 249 PANTHER 40S RIBOSOMAL PROTEIN S6 1 249 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan6g0729 249 Coils Coil 189 216 - -
Lan6g0729 249 SMART Ribosomal_S6e_2 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan6g0729 249 ProSitePatterns Ribosomal protein S6e signature. 52 63 IPR018282 GO:0003735|GO:0005840|GO:0006412
Lan6g0729 249 Pfam Ribosomal protein S6e 1 128 IPR001377 GO:0003735|GO:0005840|GO:0006412
Lan6g0729 249 MobiDBLite consensus disorder prediction 220 237 - -
Lan6g0729 249 Gene3D - 133 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g0729 Lan-Chr6 6632653 6634897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g0729 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 73.092 9.53e-121 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g0729 K02991 - gmx:100786559 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0729 6 6632653 6634897 Lan19g0385 19 4833294 4836117 PCT
Lan6g0729 6 6632653 6634897 Lan16g0149 16 1170377 1172674 PCT
Lan19g0385 19 4833294 4836117 Lan6g0729 6 6632653 6634897 PCT
Lan16g0149 16 1170377 1172674 Lan6g0729 6 6632653 6634897 PCT